CCDS Report For Consensus CDS - NCBI

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Report for CCDS6103.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6103.1 Public Homo sapiens 8 LSM1 24 110 108 CCDS HistoryNCBI Gene:27257Re-query CCDS DB by CCDS ID:6103.1Re-query CCDS DB by GeneID:27257See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6103.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311351.9 ENSP00000310596.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311351.9Link to Ensembl Protein Viewer:ENSP00000310596.4Re-query CCDS DB by Nucleotide ID:ENST00000311351Re-query CCDS DB by Protein ID:ENSP00000310596
Original member Current member NCBI NM_014462.3 NP_055277.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014462.3Link to Protein Sequence:NP_055277.1Re-query CCDS DB by Nucleotide ID:NM_014462Re-query CCDS DB by Protein ID:NP_055277Link to BLAST:NP_055277.1
RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055277.1 133 O15116 133 100% 0 0

Chromosomal Locations for CCDS 6103.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 38163670 38163840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38169802 38169917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38171965 38172033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38176275 38176320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.
Nucleotide Sequence (402 nt): ATGAACTATATGCCTGGCACCGCCAGCCTCATCGAGGACATTGACAAAAAGCACTTGGTTCTGCTTCGAGATGGAAGGACACTTATAGGCTTTTTAAGAAGCATTGATCAATTTGCAAACTTAGTGCTACATCAGACTGTGGAGCGTATTCATGTGGGCAAAAAATACGGTGATATTCCTCGAGGGATTTTTGTGGTCAGAGGAGAAAATGTGGTCCTACTAGGAGAAATAGACTTGGAAAAGGAGAGTGACACACCCCTCCAGCAAGTATCCATTGAAGAAATTCTAGAAGAACAAAGGGTGGAACAGCAGACCAAGCTGGAAGCAGAGAAGTTGAAAGTGCAGGCCCTGAAGGACCGAGGTCTTTCCATTCCTCGAGCAGATACTCTTGATGAGTACTAATranslation (133 aa): MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDRGLSIPRADTLDEY

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