CHD9 Chromodomain Helicase DNA Binding Protein 9 [ (human)]

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Create FileAdd to ClipboardAdd to Collections CHD9 chromodomain helicase DNA binding protein 9 [ Homo sapiens (human) ] Gene ID: 80205, updated on 25-Nov-2025

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Gene Sequences (FASTA) Transcript sequences (FASTA) Protein sequences(FASTA)

In addition, your package will include a detailed data report in both TSV and JSONL formats.

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Summary

Go to the top of the page Help Official Symbol CHD9provided by HGNC Official Full Name chromodomain helicase DNA binding protein 9provided by HGNC Primary source HGNC:HGNC:25701 See related Ensembl:ENSG00000177200 MIM:616936; AllianceGenome:HGNC:25701 Gene type protein coding RefSeq status VALIDATED Organism Homo sapiens Lineage Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo Also known as AD013; CHD-9; CReMM; KISH2; PRIC320 Summary Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and DNA helicase activity. Predicted to be involved in chromatin organization. Located in cytosol and nucleoplasm. [provided by Alliance of Genome Resources, Apr 2025] Expression Ubiquitous expression in thyroid (RPKM 7.0), ovary (RPKM 6.1) and 25 other tissues See more Orthologs mouse all NEW Try the new Gene table Try the new Transcript table

Genomic context

Go to the top of the page Help See CHD9 in Genome Data Viewer Location: 16q12.2 Exon count: 56

Annotation release	Status	Assembly	Chr	Location
RS_2025_08	current	GRCh38.p14 (GCF_000001405.40)	16	NC_000016.10 (53054991..53327497)
RS_2025_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	16	NC_060940.1 (58852750..59125294)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	16	NC_000016.9 (53088903..53361409)

Chromosome 16 - NC_000016.10

Genomic regions, transcripts, and products

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Genomic Sequence: NC_000016.10 Chromosome 16 Reference GRCh38.p14 Primary Assembly NC_060940.1 Chromosome 16 Alternate T2T-CHM13v2.0 NC_000016.9 Chromosome 16 Reference GRCh37.p13 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help See details Tissue-specific circular RNA induction during human fetal development RNA sequencing of total RNA from 20 human tissues HPA RNA-seq normal tissues

• Project title: Tissue-specific circular RNA induction during human fetal development
• Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
• BioProject: PRJNA270632
• Publication: PMID 26076956
• Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

1. Characterization and functional analysis of CReMM, a novel chromodomain helicase DNA-binding protein. Shur I, et al. J Mol Biol, 2005 Sep 23. PMID 16095617
2. Dynamic interactions of chromatin-related mesenchymal modulator, a chromodomain helicase-DNA-binding protein, with promoters in osteoprogenitors. Shur I, et al. Stem Cells, 2006 May. PMID 16705189
3. Gene expression regulation by the Chromodomain helicase DNA-binding protein 9 (CHD9) chromatin remodeler is dispensable for murine development. Alendar A, et al. PLoS One, 2020. PMID 32453735, Free PMC Article
4. Expression and regulation of CReMM, a chromodomain helicase-DNA-binding (CHD), in marrow stroma derived osteoprogenitors. Marom R, et al. J Cell Physiol, 2006 Jun. PMID 16523501
5. PRIC320, a transcription coactivator, isolated from peroxisome proliferator-binding protein complex. Surapureddi S, et al. Biochem Biophys Res Commun, 2006 May 5. PMID 16554032

See all (46) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

1. Gene expression regulation by the Chromodomain helicase DNA-binding protein 9 (CHD9) chromatin remodeler is dispensable for murine development. Title: Gene expression regulation by the Chromodomain helicase DNA-binding protein 9 (CHD9) chromatin remodeler is dispensable for murine development.
2. Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator) Title: Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.
3. CReMM is a chromodomain helicase-DNA-binding protein expressed by osteoprogenitors Title: Expression and regulation of CReMM, a chromodomain helicase-DNA-binding (CHD), in marrow stroma derived osteoprogenitors.
4. Chromatin immunoprecipitation assay was applied to follow the dynamics of CReMM binding to A/T-rich regions on promoters of genes that play a role in osteoblast maturation. Title: Dynamic interactions of chromatin-related mesenchymal modulator, a chromodomain helicase-DNA-binding protein, with promoters in osteoprogenitors.
5. The CHD9 (CReMM) protein is extensively phosphorylated, has DNA-dependent ATPase activity, and binds to A/T-rich DNA. It is also expressed in mesenchymal progenitors. Title: Characterization and functional analysis of CReMM, a novel chromodomain helicase DNA-binding protein.

Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.EBI GWAS CatalogEBI GWAS CatalogPubMed

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

• MARC_16469-16470:1019838682:1 (e-PCR)
  • UniSTS:268049

• MARC_16469-16470:1033416132:1 (e-PCR)
  • UniSTS:268049

• D16S3034 (e-PCR), detects polymorphism
  • UniSTS:60960

• RH99233 (e-PCR)
  • UniSTS:90690

• G10682 (e-PCR)
  • UniSTS:53062

• RH65296 (e-PCR)
  • UniSTS:90971

• D16S2560E (e-PCR)
  • UniSTS:151648

• G36101 (e-PCR)
  • UniSTS:26998

• SHGC-61158 (e-PCR)
  • UniSTS:54137

• ksks178 (e-PCR)
  • UniSTS:514206

• RH75588 (e-PCR)
  • UniSTS:85407

• RH98880 (e-PCR)
  • UniSTS:89302

• SHGC-60563 (e-PCR)
  • UniSTS:45538

• D16S472E (e-PCR)
  • UniSTS:181751

Homology

• NCBI Orthologs
Orthologs from OrthoDB

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotationmore info
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotationmore info
enables DNA binding	IEA Inferred from Electronic Annotationmore info
enables hydrolase activity	IEA Inferred from Electronic Annotationmore info
enables nucleotide binding	IEA Inferred from Electronic Annotationmore info
enables protein binding	IPI Inferred from Physical Interactionmore info	PubMed

Process	Evidence Code	Pubs
involved_in chromatin organization	IEA Inferred from Electronic Annotationmore info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotationmore info
located_in cytosol	IDA Inferred from Direct Assaymore info
located_in nucleoplasm	IDA Inferred from Direct Assaymore info
located_in nucleoplasm	IEA Inferred from Electronic Annotationmore info
located_in nucleoplasm	TAS Traceable Author Statementmore info
located_in nucleus	IEA Inferred from Electronic Annotationmore info

General protein information

Go to the top of the page Help Preferred Names chromodomain-helicase-DNA-binding protein 9 Names ATP-dependent helicase CHD9 PPAR-alpha-interacting complex protein 320 kDa PPAR{gamma}-interacting cofactor 320 kDa chromatin remodeling factor CHROM1 chromatin-related mesenchymal modulator ciprofibrate bound protein p240 kismet homolog 2 peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein proteinx0008 NP_001295248.1

• EC 3.6.4.12

NP_001339056.1

• EC 3.6.4.12

NP_001339085.1

• EC 3.6.4.12

NP_001339086.1

• EC 3.6.4.12

NP_001339087.1

• EC 3.6.4.12

NP_001369282.1

• EC 3.6.4.12

NP_001369283.1

• EC 3.6.4.12

NP_001369284.1

• EC 3.6.4.12

NP_079410.4

• EC 3.6.4.12

XP_005256225.1

• EC 3.6.4.12

XP_006721344.1

• EC 3.6.4.12

XP_006721346.1

• EC 3.6.4.12

XP_011521649.1

• EC 3.6.4.12

XP_016879208.1

• EC 3.6.4.12

XP_016879209.1

• EC 3.6.4.12

XP_016879213.1

• EC 3.6.4.12

XP_024306227.1

• EC 3.6.4.12

XP_024306229.1

• EC 3.6.4.12

XP_047290643.1

• EC 3.6.4.12

XP_047290644.1

• EC 3.6.4.12

XP_047290645.1

• EC 3.6.4.12

XP_047290646.1

• EC 3.6.4.12

XP_047290647.1

• EC 3.6.4.12

XP_047290648.1

• EC 3.6.4.12

XP_047290649.1

• EC 3.6.4.12

XP_047290650.1

• EC 3.6.4.12

XP_047290651.1

• EC 3.6.4.12

XP_047290652.1

• EC 3.6.4.12

XP_047290653.1

• EC 3.6.4.12

XP_047290654.1

• EC 3.6.4.12

XP_047290655.1

• EC 3.6.4.12

XP_047290656.1

• EC 3.6.4.12

XP_047290657.1

• EC 3.6.4.12

XP_047290658.1

• EC 3.6.4.12

XP_047290659.1

• EC 3.6.4.12

XP_047290660.1

• EC 3.6.4.12

XP_047290661.1

• EC 3.6.4.12

XP_047290662.1

• EC 3.6.4.12

XP_047290663.1

• EC 3.6.4.12

XP_047290664.1

• EC 3.6.4.12

XP_047290665.1

• EC 3.6.4.12

XP_047290666.1

• EC 3.6.4.12

XP_054169978.1

• EC 3.6.4.12

XP_054169979.1

• EC 3.6.4.12

XP_054169980.1

• EC 3.6.4.12

XP_054169981.1

• EC 3.6.4.12

XP_054169982.1

• EC 3.6.4.12

XP_054169983.1

• EC 3.6.4.12

XP_054169984.1

• EC 3.6.4.12

XP_054169985.1

• EC 3.6.4.12

XP_054169986.1

• EC 3.6.4.12

XP_054169987.1

• EC 3.6.4.12

XP_054169988.1

• EC 3.6.4.12

XP_054169989.1

• EC 3.6.4.12

XP_054169990.1

• EC 3.6.4.12

XP_054169991.1

• EC 3.6.4.12

XP_054169992.1

• EC 3.6.4.12

XP_054169993.1

• EC 3.6.4.12

XP_054169994.1

• EC 3.6.4.12

XP_054169995.1

• EC 3.6.4.12

XP_054169996.1

• EC 3.6.4.12

XP_054169997.1

• EC 3.6.4.12

XP_054169998.1

• EC 3.6.4.12

XP_054169999.1

• EC 3.6.4.12

XP_054170000.1

• EC 3.6.4.12

XP_054170001.1

• EC 3.6.4.12

XP_054170002.1

• EC 3.6.4.12

XP_054170003.1

• EC 3.6.4.12

XP_054170004.1

• EC 3.6.4.12

XP_054170005.1

• EC 3.6.4.12

XP_054170006.1

• EC 3.6.4.12

XP_054170007.1

• EC 3.6.4.12

XP_054170008.1

• EC 3.6.4.12

XP_054170009.1

• EC 3.6.4.12

XP_054170010.1

• EC 3.6.4.12

XP_054170011.1

• EC 3.6.4.12

XP_054170012.1

• EC 3.6.4.12

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

1. NM_001308319.2 → NP_001295248.1  chromodomain-helicase-DNA-binding protein 9 isoform 1

   See identical proteins and their annotated locations for NP_001295248.1

   Status: VALIDATED

   Description Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). Variants 1 and 7 both encode the same isoform (1). Source sequence(s) AC007906, AC079416 Consensus CDS CCDS76865.1 UniProtKB/Swiss-Prot B2RTU2, B9ZVQ0, O15025, Q1WF12, Q3L8U1, Q6DTK9, Q9H9V7, Q9UHM2 UniProtKB/TrEMBL B7ZML1 Related ENSP00000396345.2, ENST00000447540.6 Conserved Domains (6) summary smart00592Location:2556 → 2600 BRK; domain in transcription and CHROMO domain helicases PLN03142Location:811 → 1480 PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional COG5422Location:176 → 362 ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] COG5641Location:161 → 558 GAT1; GATA Zn-finger-containing transcription factor [Transcription] cd18663Location:770 → 828 CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins cd18668Location:686 → 750 CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

2. NM_001352127.3 → NP_001339056.1  chromodomain-helicase-DNA-binding protein 9 isoform 2

   Status: VALIDATED

   Description Transcript Variant: This variant (3), as well as variant 2, encodes isoform 2. Source sequence(s) AC007906, AC079416 Consensus CDS CCDS45485.1 UniProtKB/TrEMBL B7ZML1 Related ENSP00000455307.1, ENST00000564845.5 Conserved Domains (6) summary smart00592Location:2540 → 2584 BRK; domain in transcription and CHROMO domain helicases COG5048Location:80 → 479 COG5048; FOG: Zn-finger [General function prediction only] cd00024Location:692 → 752 CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ... pfam00385Location:773 → 827 Chromo; Chromo (CHRromatin Organisation MOdifier) domain pfam15350Location:164 → 355 ETAA1; Ewing's tumor-associated antigen 1 homolog cl26465Location:811 → 1480 SNF2_N; SNF2 family N-terminal domain

3. NM_001352156.3 → NP_001339085.1  chromodomain-helicase-DNA-binding protein 9 isoform 3

   Status: VALIDATED

   Source sequence(s) AC007906, AC079416 Consensus CDS CCDS92161.1 UniProtKB/TrEMBL B7ZML1, H3BTW3 Related ENSP00000457355.2, ENST00000565803.2 Conserved Domains (4) summary smart00592Location:2083 → 2127 BRK; domain in transcription and CHROMO domain helicases cd00024Location:218 → 278 CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ... pfam00385Location:299 → 353 Chromo; Chromo (CHRromatin Organisation MOdifier) domain cl26465Location:337 → 1006 SNF2_N; SNF2 family N-terminal domain

4. NM_001352157.3 → NP_001339086.1  chromodomain-helicase-DNA-binding protein 9 isoform 4

   Status: VALIDATED

   Source sequence(s) AC007906, AC079416 UniProtKB/TrEMBL Q461N2 Conserved Domains (4) summary smart00592Location:2067 → 2111 BRK; domain in transcription and CHROMO domain helicases cd00024Location:218 → 278 CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ... pfam00385Location:299 → 353 Chromo; Chromo (CHRromatin Organisation MOdifier) domain cl26465Location:337 → 1006 SNF2_N; SNF2 family N-terminal domain

5. NM_001352158.3 → NP_001339087.1  chromodomain-helicase-DNA-binding protein 9 isoform 5

   Status: VALIDATED

   Source sequence(s) AC007906, AC079416 UniProtKB/TrEMBL Q461N2 Conserved Domains (4) summary smart00592Location:2034 → 2078 BRK; domain in transcription and CHROMO domain helicases cd00024Location:185 → 245 CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ... pfam00385Location:266 → 320 Chromo; Chromo (CHRromatin Organisation MOdifier) domain cl26465Location:304 → 973 SNF2_N; SNF2 family N-terminal domain

6. NM_001382353.1 → NP_001369282.1  chromodomain-helicase-DNA-binding protein 9 isoform 1

   Status: VALIDATED

   Description Transcript Variant: This variant (7), as well as variant 1, encodes isoform 1. Source sequence(s) AC007906, AC079416 Consensus CDS CCDS76865.1 UniProtKB/Swiss-Prot B2RTU2, B9ZVQ0, O15025, Q1WF12, Q3L8U1, Q6DTK9, Q9H9V7, Q9UHM2 UniProtKB/TrEMBL B7ZML1 Related ENSP00000381522.3, ENST00000398510.7 Conserved Domains (6) summary smart00592Location:2556 → 2600 BRK; domain in transcription and CHROMO domain helicases PLN03142Location:811 → 1480 PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional COG5422Location:176 → 362 ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] COG5641Location:161 → 558 GAT1; GATA Zn-finger-containing transcription factor [Transcription] cd18663Location:770 → 828 CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins cd18668Location:686 → 750 CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

7. NM_001382354.1 → NP_001369283.1  chromodomain-helicase-DNA-binding protein 9 isoform 6

   Status: VALIDATED

   Source sequence(s) AC007906, AC079416 UniProtKB/TrEMBL Q461N2 Conserved Domains (5) summary smart00592Location:2050 → 2094 BRK; domain in transcription and CHROMO domain helicases PLN03142Location:304 → 973 PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional cd18663Location:263 → 321 CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins cd18668Location:179 → 243 CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins cd18061Location:353 → 574 DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9

8. NM_001382355.1 → NP_001369284.1  chromodomain-helicase-DNA-binding protein 9 isoform 7

   Status: VALIDATED

   Source sequence(s) AC007906, AC079416 UniProtKB/TrEMBL Q461N2 Conserved Domains (5) summary smart00592Location:2049 → 2093 BRK; domain in transcription and CHROMO domain helicases PLN03142Location:304 → 973 PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional cd18663Location:263 → 321 CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins cd18668Location:179 → 243 CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins cd18061Location:353 → 574 DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9

9. NM_025134.7 → NP_079410.4  chromodomain-helicase-DNA-binding protein 9 isoform 2

   See identical proteins and their annotated locations for NP_079410.4

   Status: VALIDATED

   Description Transcript Variant: This variant (2), as well as variant 3, encodes isoform 2. Source sequence(s) AC007906, AC079416 Consensus CDS CCDS45485.1 UniProtKB/TrEMBL B7ZML1 Related ENSP00000457466.1, ENST00000566029.5 Conserved Domains (6) summary smart00592Location:2540 → 2584 BRK; domain in transcription and CHROMO domain helicases COG5048Location:80 → 479 COG5048; FOG: Zn-finger [General function prediction only] cd00024Location:692 → 752 CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ... pfam00385Location:773 → 827 Chromo; Chromo (CHRromatin Organisation MOdifier) domain pfam15350Location:164 → 355 ETAA1; Ewing's tumor-associated antigen 1 homolog cl26465Location:811 → 1480 SNF2_N; SNF2 family N-terminal domain

RNA

1. NR_168108.1 RNA Sequence

   Status: VALIDATED

   Source sequence(s) AC007906

2. NR_168109.1 RNA Sequence

   Status: VALIDATED

   Source sequence(s) AC007906

3. NR_168111.1 RNA Sequence

   Status: VALIDATED

   Source sequence(s) AC007906

4. NR_168112.1 RNA Sequence

   Status: VALIDATED

   Source sequence(s) AC007906

5. NR_168114.1 RNA Sequence

   Status: VALIDATED

   Source sequence(s) AC007906

6. NR_168116.1 RNA Sequence

   Status: VALIDATED

   Source sequence(s) AC007906

7. NR_168117.1 RNA Sequence

   Status: VALIDATED

   Source sequence(s) AC007906

8. NR_168119.1 RNA Sequence

   Status: VALIDATED

   Source sequence(s) AC007906

9. NR_168120.1 RNA Sequence

   Status: VALIDATED

   Source sequence(s) AC007906

10. NR_168123.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s) AC007906

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2025_08

The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference GRCh38.p14 Primary Assembly

Genomic

1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

   Range 53054991..53327497 Download GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. XM_047434707.1 → XP_047290663.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

   UniProtKB/TrEMBL B7ZML1

2. XM_047434693.1 → XP_047290649.1  chromodomain-helicase-DNA-binding protein 9 isoform X2

   UniProtKB/Swiss-Prot B2RTU2, B9ZVQ0, O15025, Q1WF12, Q3L8U1, Q6DTK9, Q9H9V7, Q9UHM2 UniProtKB/TrEMBL B7ZML1

3. XM_047434692.1 → XP_047290648.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

   UniProtKB/TrEMBL B7ZML1

4. XM_017023719.2 → XP_016879208.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

   UniProtKB/TrEMBL B7ZML1 Conserved Domains (6) summary smart00592Location:2557 → 2601 BRK; domain in transcription and CHROMO domain helicases COG5048Location:80 → 479 COG5048; FOG: Zn-finger [General function prediction only] cd00024Location:692 → 752 CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ... pfam00385Location:773 → 827 Chromo; Chromo (CHRromatin Organisation MOdifier) domain pfam15350Location:164 → 355 ETAA1; Ewing's tumor-associated antigen 1 homolog cl26465Location:811 → 1480 SNF2_N; SNF2 family N-terminal domain

5. XM_047434703.1 → XP_047290659.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

   UniProtKB/TrEMBL B7ZML1

6. XM_017023720.2 → XP_016879209.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

   UniProtKB/TrEMBL B7ZML1 Conserved Domains (6) summary smart00592Location:2557 → 2601 BRK; domain in transcription and CHROMO domain helicases COG5048Location:80 → 479 COG5048; FOG: Zn-finger [General function prediction only] cd00024Location:692 → 752 CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ... pfam00385Location:773 → 827 Chromo; Chromo (CHRromatin Organisation MOdifier) domain pfam15350Location:164 → 355 ETAA1; Ewing's tumor-associated antigen 1 homolog cl26465Location:811 → 1480 SNF2_N; SNF2 family N-terminal domain

7. XM_047434699.1 → XP_047290655.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

   UniProtKB/TrEMBL B7ZML1

8. XM_024450459.2 → XP_024306227.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

   UniProtKB/TrEMBL B7ZML1 Conserved Domains (6) summary smart00592Location:2557 → 2601 BRK; domain in transcription and CHROMO domain helicases COG5048Location:80 → 479 COG5048; FOG: Zn-finger [General function prediction only] cd00024Location:692 → 752 CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ... pfam00385Location:773 → 827 Chromo; Chromo (CHRromatin Organisation MOdifier) domain pfam15350Location:164 → 355 ETAA1; Ewing's tumor-associated antigen 1 homolog cl26465Location:811 → 1480 SNF2_N; SNF2 family N-terminal domain

9. XM_047434695.1 → XP_047290651.1  chromodomain-helicase-DNA-binding protein 9 isoform X3

   UniProtKB/TrEMBL B7ZML1

10. XM_047434700.1 → XP_047290656.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

    UniProtKB/TrEMBL B7ZML1

11. XM_005256168.5 → XP_005256225.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    See identical proteins and their annotated locations for XP_005256225.1

    UniProtKB/TrEMBL B7ZML1 Conserved Domains (6) summary smart00592Location:2557 → 2601 BRK; domain in transcription and CHROMO domain helicases COG5048Location:80 → 479 COG5048; FOG: Zn-finger [General function prediction only] cd00024Location:692 → 752 CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ... pfam00385Location:773 → 827 Chromo; Chromo (CHRromatin Organisation MOdifier) domain pfam15350Location:164 → 355 ETAA1; Ewing's tumor-associated antigen 1 homolog cl26465Location:811 → 1480 SNF2_N; SNF2 family N-terminal domain

12. XM_047434694.1 → XP_047290650.1  chromodomain-helicase-DNA-binding protein 9 isoform X3

    UniProtKB/TrEMBL B7ZML1

13. XM_047434696.1 → XP_047290652.1  chromodomain-helicase-DNA-binding protein 9 isoform X4

    UniProtKB/TrEMBL B7ZML1

14. XM_047434697.1 → XP_047290653.1  chromodomain-helicase-DNA-binding protein 9 isoform X5

    UniProtKB/TrEMBL B7ZML1

15. XM_047434698.1 → XP_047290654.1  chromodomain-helicase-DNA-binding protein 9 isoform X6

    UniProtKB/TrEMBL B7ZML1

16. XM_047434702.1 → XP_047290658.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

    UniProtKB/TrEMBL B7ZML1

17. XM_047434688.1 → XP_047290644.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL B7ZML1

18. XM_047434706.1 → XP_047290662.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

    UniProtKB/TrEMBL B7ZML1

19. XM_047434689.1 → XP_047290645.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL B7ZML1

20. XM_047434690.1 → XP_047290646.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL B7ZML1

21. XM_047434701.1 → XP_047290657.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

    UniProtKB/TrEMBL B7ZML1

22. XM_006721283.4 → XP_006721346.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    See identical proteins and their annotated locations for XP_006721346.1

    UniProtKB/TrEMBL B7ZML1 Conserved Domains (6) summary smart00592Location:2557 → 2601 BRK; domain in transcription and CHROMO domain helicases COG5048Location:80 → 479 COG5048; FOG: Zn-finger [General function prediction only] cd00024Location:692 → 752 CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ... pfam00385Location:773 → 827 Chromo; Chromo (CHRromatin Organisation MOdifier) domain pfam15350Location:164 → 355 ETAA1; Ewing's tumor-associated antigen 1 homolog cl26465Location:811 → 1480 SNF2_N; SNF2 family N-terminal domain

23. XM_047434704.1 → XP_047290660.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

    UniProtKB/TrEMBL B7ZML1

24. XM_047434687.1 → XP_047290643.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL B7ZML1

25. XM_047434705.1 → XP_047290661.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

    UniProtKB/TrEMBL B7ZML1

26. XM_011523347.3 → XP_011521649.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    See identical proteins and their annotated locations for XP_011521649.1

    UniProtKB/TrEMBL B7ZML1 Conserved Domains (6) summary smart00592Location:2557 → 2601 BRK; domain in transcription and CHROMO domain helicases COG5048Location:80 → 479 COG5048; FOG: Zn-finger [General function prediction only] cd00024Location:692 → 752 CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ... pfam00385Location:773 → 827 Chromo; Chromo (CHRromatin Organisation MOdifier) domain pfam15350Location:164 → 355 ETAA1; Ewing's tumor-associated antigen 1 homolog cl26465Location:811 → 1480 SNF2_N; SNF2 family N-terminal domain

27. XM_017023724.2 → XP_016879213.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

    UniProtKB/TrEMBL B7ZML1 Conserved Domains (6) summary smart00592Location:2106 → 2150 BRK; domain in transcription and CHROMO domain helicases cd00024Location:241 → 301 CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ... cd00046Location:428 → 577 DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. pfam00176Location:412 → 699 SNF2_N; SNF2 family N-terminal domain pfam00271Location:731 → 845 Helicase_C; Helicase conserved C-terminal domain pfam00385Location:323 → 376 Chromo; Chromo (CHRromatin Organization MOdifier) domain

28. XM_006721281.3 → XP_006721344.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    See identical proteins and their annotated locations for XP_006721344.1

    UniProtKB/TrEMBL B7ZML1 Conserved Domains (6) summary smart00592Location:2557 → 2601 BRK; domain in transcription and CHROMO domain helicases COG5048Location:80 → 479 COG5048; FOG: Zn-finger [General function prediction only] cd00024Location:692 → 752 CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ... pfam00385Location:773 → 827 Chromo; Chromo (CHRromatin Organisation MOdifier) domain pfam15350Location:164 → 355 ETAA1; Ewing's tumor-associated antigen 1 homolog cl26465Location:811 → 1480 SNF2_N; SNF2 family N-terminal domain

29. XM_047434691.1 → XP_047290647.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL B7ZML1

30. XM_047434709.1 → XP_047290665.1  chromodomain-helicase-DNA-binding protein 9 isoform X9

    UniProtKB/TrEMBL Q461N2

31. XM_047434710.1 → XP_047290666.1  chromodomain-helicase-DNA-binding protein 9 isoform X10

    UniProtKB/TrEMBL Q461N2

32. XM_047434708.1 → XP_047290664.1  chromodomain-helicase-DNA-binding protein 9 isoform X8

    UniProtKB/TrEMBL B7ZML1

33. XM_024450461.2 → XP_024306229.1  chromodomain-helicase-DNA-binding protein 9 isoform X11

    UniProtKB/TrEMBL Q461N2 Related ENST00000219084.10 Conserved Domains (4) summary smart00592Location:1896 → 1940 BRK; domain in transcription and CHROMO domain helicases cd00024Location:31 → 91 CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ... pfam00385Location:112 → 166 Chromo; Chromo (CHRromatin Organisation MOdifier) domain cl26465Location:150 → 819 SNF2_N; SNF2 family N-terminal domain

RNA

1. XR_007064921.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

1. NC_060940.1 Alternate T2T-CHM13v2.0

   Range 58852750..59125294 Download GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. XM_054314033.1 → XP_054170008.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

   UniProtKB/TrEMBL B7ZML1

2. XM_054314017.1 → XP_054169992.1  chromodomain-helicase-DNA-binding protein 9 isoform X2

   UniProtKB/TrEMBL B7ZML1

3. XM_054314016.1 → XP_054169991.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

   UniProtKB/TrEMBL B7ZML1

4. XM_054314008.1 → XP_054169983.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

   UniProtKB/TrEMBL B7ZML1

5. XM_054314029.1 → XP_054170004.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

   UniProtKB/TrEMBL B7ZML1

6. XM_054314009.1 → XP_054169984.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

   UniProtKB/TrEMBL B7ZML1

7. XM_054314024.1 → XP_054169999.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

   UniProtKB/TrEMBL B7ZML1

8. XM_054314011.1 → XP_054169986.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

   UniProtKB/TrEMBL B7ZML1

9. XM_054314019.1 → XP_054169994.1  chromodomain-helicase-DNA-binding protein 9 isoform X3

   UniProtKB/TrEMBL B7ZML1

10. XM_054314025.1 → XP_054170000.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

    UniProtKB/TrEMBL B7ZML1

11. XM_054314003.1 → XP_054169978.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL B7ZML1

12. XM_054314018.1 → XP_054169993.1  chromodomain-helicase-DNA-binding protein 9 isoform X3

    UniProtKB/TrEMBL B7ZML1

13. XM_054314020.1 → XP_054169995.1  chromodomain-helicase-DNA-binding protein 9 isoform X4

    UniProtKB/TrEMBL B7ZML1

14. XM_054314021.1 → XP_054169996.1  chromodomain-helicase-DNA-binding protein 9 isoform X5

    UniProtKB/TrEMBL B7ZML1

15. XM_054314022.1 → XP_054169997.1  chromodomain-helicase-DNA-binding protein 9 isoform X6

    UniProtKB/TrEMBL B7ZML1

16. XM_054314030.1 → XP_054170005.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

    UniProtKB/TrEMBL B7ZML1

17. XM_054314007.1 → XP_054169982.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL B7ZML1

18. XM_054314031.1 → XP_054170006.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

    UniProtKB/TrEMBL B7ZML1

19. XM_054314010.1 → XP_054169985.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL B7ZML1

20. XM_054314026.1 → XP_054170001.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

    UniProtKB/TrEMBL B7ZML1

21. XM_054314006.1 → XP_054169981.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL B7ZML1

22. XM_054314027.1 → XP_054170002.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

    UniProtKB/TrEMBL B7ZML1

23. XM_054314005.1 → XP_054169980.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL B7ZML1

24. XM_054314012.1 → XP_054169987.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL B7ZML1

25. XM_054314014.1 → XP_054169989.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL B7ZML1

26. XM_054314015.1 → XP_054169990.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL B7ZML1

27. XM_054314032.1 → XP_054170007.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

    UniProtKB/TrEMBL B7ZML1

28. XM_054314028.1 → XP_054170003.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

    UniProtKB/TrEMBL B7ZML1

29. XM_054314013.1 → XP_054169988.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL B7ZML1

30. XM_054314035.1 → XP_054170010.1  chromodomain-helicase-DNA-binding protein 9 isoform X9

    UniProtKB/TrEMBL Q461N2

31. XM_054314036.1 → XP_054170011.1  chromodomain-helicase-DNA-binding protein 9 isoform X10

    UniProtKB/TrEMBL Q461N2

32. XM_054314034.1 → XP_054170009.1  chromodomain-helicase-DNA-binding protein 9 isoform X8

    UniProtKB/TrEMBL B7ZML1

33. XM_054314023.1 → XP_054169998.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

    UniProtKB/TrEMBL B7ZML1

34. XM_054314004.1 → XP_054169979.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL B7ZML1

35. XM_054314037.1 → XP_054170012.1  chromodomain-helicase-DNA-binding protein 9 isoform X11

    UniProtKB/TrEMBL Q461N2

RNA

1. XR_008484740.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

These RefSeqs were suppressed for the cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related sequence links, or BLAST links (BLink), but may still be retrieved by clicking on their accession.version below.

1. NM_015287.1: Suppressed sequence

   Description NM_015287.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.

Related sequences

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Nucleotide		Protein
Heading	Accession and Version

Protein Accession	Links
	GenPept Link	UniProtKB Link
Q3L8U1.2	GenPept	UniProtKB/Swiss-Prot:Q3L8U1

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