CHST11 Carbohydrate Sulfotransferase 11 [ (human)] - NCBI

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Create FileAdd to ClipboardAdd to Collections CHST11 carbohydrate sulfotransferase 11 [ Homo sapiens (human) ] Gene ID: 50515, updated on 25-Nov-2025 Gene Sequences (FASTA) Transcript sequences (FASTA) Protein sequences(FASTA)

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Summary

Go to the top of the page Help Official Symbol CHST11provided by HGNC Official Full Name carbohydrate sulfotransferase 11provided by HGNC Primary source HGNC:HGNC:17422 See related Ensembl:ENSG00000171310 MIM:610128; AllianceGenome:HGNC:17422 Gene type protein coding RefSeq status REVIEWED Organism Homo sapiens Lineage Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo Also known as C4ST; C4ST1; OCBMD; C4ST-1; HSA269537 Summary The protein encoded by this gene belongs to the sulfotransferase 2 family. It is localized to the golgi membrane, and catalyzes the transfer of sulfate to position 4 of the N-acetylgalactosamine (GalNAc) residue of chondroitin. Chondroitin sulfate constitutes the predominant proteoglycan present in cartilage, and is distributed on the surfaces of many cells and extracellular matrices. A chromosomal translocation involving this gene and IgH, t(12;14)(q23;q32), has been reported in a patient with B-cell chronic lymphocytic leukemia. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2011] Expression Ubiquitous expression in appendix (RPKM 8.6), brain (RPKM 8.5) and 23 other tissues See more Orthologs mouse all NEW Try the new Gene table Try the new Transcript table

Genomic context

Go to the top of the page Help See CHST11 in Genome Data Viewer Location: 12q23.3 Exon count: 3
Annotation release Status Assembly Chr Location
RS_2025_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (104456948..104762014)
RS_2025_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (104418595..104723625)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (104850726..105155792)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence: NC_000012.12 Chromosome 12 Reference GRCh38.p14 Primary Assembly NG_029810.2 RefSeqGene NC_060936.1 Chromosome 12 Alternate T2T-CHM13v2.0 NC_000012.11 Chromosome 12 Reference GRCh37.p13 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help See details Tissue-specific circular RNA induction during human fetal development RNA sequencing of total RNA from 20 human tissues HPA RNA-seq normal tissues
  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Effect of CHST11, a novel biomarker, on the biological functionalities of clear cell renal cell carcinoma. Hu W, et al. Sci Rep, 2024 Apr 2. PMID 38565604, Free PMC Article
  2. KIAA1429-mediated m6A modification of CHST11 promotes progression of diffuse large B-cell lymphoma by regulating Hippo-YAP pathway. Chen X, et al. Cell Mol Biol Lett, 2023 Apr 19. PMID 37076815, Free PMC Article
  3. High Expression of CHST11 Correlates with Poor Prognosis and Tumor Immune Infiltration of Pancreatic Cancer. Zhang P, et al. Clin Lab, 2022 Dec 1. PMID 36546737
  4. The CHST11 gene is linked to lung cancer and pulmonary fibrosis. Li CH, et al. J Gene Med, 2022 Dec. PMID 36181245
  5. Deregulation of the carbohydrate (chondroitin 4) sulfotransferase 11 (CHST11) gene in a B-cell chronic lymphocytic leukemia with a t(12;14)(q23;q32). Schmidt HH, et al. Oncogene, 2004 Sep 9. PMID 15273723

See all (53) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Effect of CHST11, a novel biomarker, on the biological functionalities of clear cell renal cell carcinoma. Title: Effect of CHST11, a novel biomarker, on the biological functionalities of clear cell renal cell carcinoma.
  2. KIAA1429-mediated m6A modification of CHST11 promotes progression of diffuse large B-cell lymphoma by regulating Hippo-YAP pathway. Title: KIAA1429-mediated m6A modification of CHST11 promotes progression of diffuse large B-cell lymphoma by regulating Hippo-YAP pathway.
  3. High Expression of CHST11 Correlates with Poor Prognosis and Tumor Immune Infiltration of Pancreatic Cancer. Title: High Expression of CHST11 Correlates with Poor Prognosis and Tumor Immune Infiltration of Pancreatic Cancer.
  4. The CHST11 gene is linked to lung cancer and pulmonary fibrosis. Title: The CHST11 gene is linked to lung cancer and pulmonary fibrosis.
  5. Chondroitin-4-sulfate transferase-1 depletion inhibits formation of a proteoglycan-rich layer and alters immunotolerance of bone marrow mesenchymal stem cells on titanium oxide surfaces. Title: Chondroitin-4-sulfate transferase-1 depletion inhibits formation of a proteoglycan-rich layer and alters immunotolerance of bone marrow mesenchymal stem cells on titanium oxide surfaces.
  6. An epigenome-wide association study of posttraumatic stress disorder in US veterans implicates several new DNA methylation loci. Title: An epigenome-wide association study of posttraumatic stress disorder in US veterans implicates several new DNA methylation loci.
  7. Carbohydrate (Chondroitin 4) Sulfotransferase-11-Mediated Induction of Epithelial-Mesenchymal Transition and Generation of Cancer Stem Cells. Title: Carbohydrate (Chondroitin 4) Sulfotransferase-11-Mediated Induction of Epithelial-Mesenchymal Transition and Generation of Cancer Stem Cells.
  8. Our findings confirm the crucial role of CHST11 in skeletal morphogenesis and show that CHST11 defects have variable manifestations that include a variety of limb malformations and skeletal defects Title: Homozygous CHST11 mutation in chondrodysplasia, brachydactyly, overriding digits, clino-symphalangism and synpolydactyly.
  9. A C4ST-1 construct was designed and expressed in both Escherichia coli and Pichia pastoris in its non-glycosylated and glycosylated forms. Both constructs showed similar activity albeit different kinetic parameters when acting on a microbially prepared unsulfated chondroitin substrate. Moreover, the glycosylated form of C4ST-1 showed lower stability than the non-glycosylated form. Title: Expression of chondroitin-4-O-sulfotransferase in Escherichia coli and Pichia pastoris.
  10. data demonstrate that the hip osteoarthritis susceptibility is mediated by differential protein binding to the alleles of rs835487 and rs835488, which are located within an enhancer whose target may be CHST11 during chondrogenesis or an alternative gene. Title: Functional Characterization of the Osteoarthritis Susceptibility Mapping to CHST11-A Bioinformatics and Molecular Study.
Submit: New GeneRIF Correction See all GeneRIFs (22)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Associated conditions

Description Tests
Desbuquois dysplasia 2 MedGen: C4014294 OMIM: 615777 GeneReviews: Not available Compare labs
Osteochondrodysplasia, brachydactyly, and overlapping malformed digits MedGen: C4748496 OMIM: 618167 GeneReviews: Not available Compare labs

EBI GWAS Catalog

Description
A genome-wide association study of DSM-IV cannabis dependence.EBI GWAS CatalogEBI GWAS CatalogPubMed
Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.EBI GWAS CatalogEBI GWAS CatalogPubMed
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.EBI GWAS CatalogEBI GWAS CatalogPubMed

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

  • SHGC-106247 (e-PCR)
    • UniSTS:169736
  • SHGC-149540 (e-PCR)
    • UniSTS:182578
  • RH101978 (e-PCR)
    • UniSTS:96312
  • Chst11 (e-PCR), detects polymorphism
    • UniSTS:516432
  • SHGC-155530 (e-PCR)
    • UniSTS:182617
  • SHGC-155531 (e-PCR)
    • UniSTS:182618
  • SHGC-105583 (e-PCR)
    • UniSTS:169334
  • SHGC-79931 (e-PCR)
    • UniSTS:101499
  • RH15762 (e-PCR)
    • UniSTS:8572
  • D12S1075 (e-PCR)
    • UniSTS:29827
  • G64840 (e-PCR)
    • UniSTS:164746
  • SHGC-64736 (e-PCR)
    • UniSTS:100773
  • SHGC-17242 (e-PCR)
    • UniSTS:31147
  • G49574 (e-PCR)
    • UniSTS:109243
  • RH70385 (e-PCR)
    • UniSTS:45017
  • G64600 (e-PCR)
    • UniSTS:163804
  • WI-16091 (e-PCR)
    • UniSTS:62179
  • WI-18674 (e-PCR)
    • UniSTS:61926
  • D12S1647 (e-PCR), detects polymorphism
    • UniSTS:14055
  • WI-15690 (e-PCR)
    • UniSTS:61927

Homology

  • NCBI Orthologs
    • Orthologs from OrthoDB

Clone Names

  • FLJ41682, DKFZp667A035

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity IEA Inferred from Electronic Annotationmore info  
enables chondroitin 4-sulfotransferase activity IDA Inferred from Direct Assaymore info PubMed 
enables chondroitin 4-sulfotransferase activity IEA Inferred from Electronic Annotationmore info  
enables chondroitin 4-sulfotransferase activity TAS Traceable Author Statementmore info  
enables dermatan 4-sulfotransferase activity IDA Inferred from Direct Assaymore info PubMed 
enables sulfotransferase activity IBA Inferred from Biological aspect of Ancestormore info  
enables sulfotransferase activity IEA Inferred from Electronic Annotationmore info  
enables transferase activity IEA Inferred from Electronic Annotationmore info  
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA Inferred from Electronic Annotationmore info  
acts_upstream_of_or_within cartilage development IEA Inferred from Electronic Annotationmore info  
acts_upstream_of_or_within chondrocyte development IEA Inferred from Electronic Annotationmore info  
involved_in chondroitin sulfate proteoglycan biosynthetic process IDA Inferred from Direct Assaymore info PubMed 
acts_upstream_of_or_within chondroitin sulfate proteoglycan biosynthetic process IEA Inferred from Electronic Annotationmore info  
involved_in chondroitin sulfate proteoglycan biosynthetic process TAS Traceable Author Statementmore info  
acts_upstream_of_or_within chondroitin sulfate proteoglycan metabolic process IEA Inferred from Electronic Annotationmore info  
acts_upstream_of_or_within developmental growth IEA Inferred from Electronic Annotationmore info  
acts_upstream_of_or_within embryonic digit morphogenesis IEA Inferred from Electronic Annotationmore info  
acts_upstream_of_or_within embryonic limb morphogenesis IEA Inferred from Electronic Annotationmore info  
acts_upstream_of_or_within embryonic skeletal system morphogenesis IEA Inferred from Electronic Annotationmore info  
acts_upstream_of_or_within embryonic viscerocranium morphogenesis IEA Inferred from Electronic Annotationmore info  
acts_upstream_of_or_within in utero embryonic development IEA Inferred from Electronic Annotationmore info  
acts_upstream_of_or_within negative regulation of apoptotic process IEA Inferred from Electronic Annotationmore info  
acts_upstream_of_or_within negative regulation of transforming growth factor beta receptor signaling pathway IEA Inferred from Electronic Annotationmore info  
acts_upstream_of_or_within polysaccharide localization IEA Inferred from Electronic Annotationmore info  
acts_upstream_of_or_within post-anal tail morphogenesis IEA Inferred from Electronic Annotationmore info  
acts_upstream_of_or_within post-embryonic development IEA Inferred from Electronic Annotationmore info  
involved_in proteoglycan biosynthetic process IBA Inferred from Biological aspect of Ancestormore info  
acts_upstream_of_or_within regulation of cell population proliferation IEA Inferred from Electronic Annotationmore info  
acts_upstream_of_or_within respiratory gaseous exchange by respiratory system IEA Inferred from Electronic Annotationmore info  
Component Evidence Code Pubs
located_in Golgi apparatus IEA Inferred from Electronic Annotationmore info  
located_in Golgi membrane IEA Inferred from Electronic Annotationmore info  
located_in Golgi membrane TAS Traceable Author Statementmore info  
located_in membrane HDA more info PubMed 
located_in membrane IEA Inferred from Electronic Annotationmore info  
located_in membrane NAS Non-traceable Author Statementmore info PubMed 

General protein information

Go to the top of the page Help Preferred Names carbohydrate sulfotransferase 11 Names C4S-1 IgH/CHST11 fusion carbohydrate (chondroitin 4) sulfotransferase 11 chondroitin 4-O-sulfotransferase 1 NP_001167453.1
  • EC 2.8.2.5
NP_060883.1
  • EC 2.8.2.5
XP_047284870.1
  • EC 2.8.2.5
XP_047284871.1
  • EC 2.8.2.5
XP_054228123.1
  • EC 2.8.2.5
XP_054228124.1
  • EC 2.8.2.5

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029810.2 RefSeqGene

    Range 5035..310101 Download GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001173982.2 → NP_001167453.1  carbohydrate sulfotransferase 11 isoform 2

    See identical proteins and their annotated locations for NP_001167453.1

    Status: REVIEWED

    Description Transcript Variant: This variant (2) uses an alternate in-frame donor splice site at the 5' terminal exon compared to variant 1. This results in a shorter isoform (2) missing a 5 aa protein segment near the N-terminus compared to isoform 1. Source sequence(s) AC073917, AJ289134, DA853534 Consensus CDS CCDS55878.1 UniProtKB/Swiss-Prot Q9NPF2 Related ENSP00000450004.1, ENST00000549260.5 Conserved Domains (1) summary pfam03567Location:108 → 338 Sulfotransfer_2; Sulfotransferase family

  2. NM_018413.6 → NP_060883.1  carbohydrate sulfotransferase 11 isoform 1

    See identical proteins and their annotated locations for NP_060883.1

    Status: REVIEWED

    Description Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). Source sequence(s) AC073917, AK290923, DA853534 Consensus CDS CCDS9099.1 UniProtKB/Swiss-Prot A8K4F8, Q9NPF2, Q9NXY6, Q9NY36 Related ENSP00000305725.5, ENST00000303694.6 Conserved Domains (1) summary pfam03567Location:113 → 343 Sulfotransfer_2; Sulfotransferase family

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2025_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range 104456948..104762014 Download GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047428914.1 → XP_047284870.1  carbohydrate sulfotransferase 11 isoform X1

  2. XM_047428915.1 → XP_047284871.1  carbohydrate sulfotransferase 11 isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range 104418595..104723625 Download GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054372148.1 → XP_054228123.1  carbohydrate sulfotransferase 11 isoform X1

  2. XM_054372149.1 → XP_054228124.1  carbohydrate sulfotransferase 11 isoform X1

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Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9NPF2.1 GenPept UniProtKB/Swiss-Prot:Q9NPF2
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Locus-specific Databases

  • CHST11 @ LOVD

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
  • Interologous Interaction Database
    • Interologous Interaction Database
  • MilliporeSigma
    • CHST11 products
Molecular Biology Databases
  • Bgee database
    • CHST11 gene expression
  • BioGPS
    • BioGPS
  • BioGRID Open Repository of CRISPR Screens (ORCS)
    • BioGRID CRISPR Screen Phenotypes (18 hits/1368 screens)
  • CTD: Comparative Toxicogenomics Database
    • CTD: Comparative Toxicogenomics Database - CHST11
  • Domain Mapping of Disease Mutations
    • CHST11
  • Eukaryotic Promoter Database
    • CHST11_1
  • GlyGen glycoinformatics resource
    • GlyGen glycoinformatics resource
  • Human eFP Browser
    • Human eFP Browser
    • Human eFP Browser
    • Human eFP Browser
  • Ingenuity Pathways Analysis
    • Ingenuity Pathways Analysis
  • InnateDB
    • InnateDB
  • InterMine
    • InterMine
  • Kyoto Encyclopedia of Genes and Genomes
    • Kyoto Encyclopedia of Genes and Genomes
  • OMA Browser: Orthologous MAtrix
    • OMA Browser: Orthologous MAtrix
    • OMA Browser: Orthologous MAtrix
  • OrthoDB catalog of orthologs
    • Orthologs
  • PhosphoSitePlus
    • PhosphoSitePlus® - comprehensive post-translational modification resource
  • The Gene Wiki
    • The Gene Wiki
  • The Weizmann Institute of Science GeneCards and MalaCards databases
    • GeneCard for CHST11
Research Materials
  • Addgene Non-profit plasmid repository
    • Get Plasmids - Addgene
  • Bio-Techne
    • CHST11 Proteins
    • CHST11 Lysates
    • CHST11 Antibodies
  • Creative Biogene
    • carbohydrate sulfotransferase 11
  • ExactAntigen/Labome
    • reagent review
    • reagents
  • GenScript latest version of gene cDNA ORF Clone
    • GenScript latest version of gene cDNA ORF Clone
  • GeneCopoeia Inc.
    • Order shRNA clones
    • Order promoter clone
    • Order full-length ORF clone
  • OriGene Technologies
    • Order GeneID 50515 cDNA Clone|Lysate|Protein|Antibody|RNAi
Tools
  • GeneMANIA
    • GeneMANIA
Miscellaneous
  • Reactome
    • Reactome Event:Metabolism
    • Reactome Entity:Q9NPF2
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Supplemental Content

Table of contents

  • Summary
  • Genomic context
  • Genomic regions, transcripts, and products
  • Expression
  • Bibliography
  • Phenotypes
  • Variation
  • Pathways from PubChem
  • Interactions
  • General gene information Markers, Clone Names, Homology, Gene Ontology
  • General protein information
  • NCBI Reference Sequences (RefSeq)
  • Related sequences
  • Additional links Locus-specific Databases

Genome Browsers

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Related information

  • Order cDNA clone Order cDNA clone
  • BioAssay by Target (List) BioAssays related to the gene by protein target or RNAi target
  • BioAssay by Target (Summary) Summarized PubChem Data on the gene, showing the active data by default
  • BioAssay, by Gene target PubChem BioAssays done on the Gene target
  • BioAssays, RNAi Target, Active BioAssays that contain the gene as the target of a RNAi reagent, which is identified as a hit in a RNAi screening and flagged as "active" in the corresponding BioAssay record
  • BioAssays, RNAi Target, Tested BioAssays that contain the gene as the target of a RNAi reagent
  • BioProjects BioProjects related to a gene
  • CCDS Link to CCDS
  • ClinVar Related medical variations
  • Conserved Domains Related CDD
  • dbVar Link from Gene to dbVar
  • Full text in PMC PMC links
  • Full text in PMC_nucleotide Full text in PubMedCentral identified from shared sequence links
  • Functional Class Functional class of the sequence domain architecture
  • Gene neighbors Overlapping genes and two nearest non-overlapping genes on either side
  • Genes with a similar H3K4me3 profile Genes with a similar profile of promoter-activating H3K4me3 modifications across several tissue types
  • Genome Related Genome
  • GEO Profiles Related GEO
  • GTR Tests for this gene in the NIH Genetic Testing Registry
  • HomoloGene Related HomoloGene
  • MedGen Related information in MedGen
  • Nucleotide Link to related Nucleotide entry
  • OMIM Link to related OMIM entry
  • Protein Link to related protein entry
  • PubChem Compound PubChem Compounds
  • PubChem Substance PubChem Substances
  • PubMed Link to related PubMed entry
  • PubMed (GeneRIF) Link to related PubMed article from GeneRIFs
  • PubMed (OMIM) Gene links to PubMed derived from omim_pubmed_cited links
  • PubMed(nucleotide/PMC) Citations in PubMed identified from shared sequence and PMC links.
  • RefSeq Proteins Link to Protein RefSeqs
  • RefSeq RNAs Link to Nucleotide RefSeq RNAs
  • RefSeqGene Link to Nucleotide RefSeqGenes
  • Related gene-specific medical variations Related medical variations
  • SNP Related SNP records
  • Taxonomy Link to related taxonomy entry
  • Variation Viewer Related Variants

Links to other resources

  • HGNC
  • Ensembl
  • AllianceGenome
  • AceView
  • CHST11 @ LOVD
  • UCSC
  • MGC
  • HuGE Navigator
  • KEGG
  • Reactome

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