Gene ResultCCDC9B Coiled-coil Domain Containing 9B [ (human)]

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Create FileAdd to ClipboardAdd to Collections CCDC9B coiled-coil domain containing 9B [ Homo sapiens (human) ] Gene ID: 388115, updated on 25-Nov-2025 Gene Sequences (FASTA) Transcript sequences (FASTA) Protein sequences(FASTA)

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Summary

Go to the top of the page Help Official Symbol CCDC9Bprovided by HGNC Official Full Name coiled-coil domain containing 9Bprovided by HGNC Primary source HGNC:HGNC:33488 See related Ensembl:ENSG00000188549 AllianceGenome:HGNC:33488 Gene type protein coding RefSeq status VALIDATED Organism Homo sapiens Lineage Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo Also known as C15orf52 Summary Enables RNA binding activity. [provided by Alliance of Genome Resources, Jul 2025] Expression Broad expression in thyroid (RPKM 12.1), heart (RPKM 11.6) and 24 other tissues See more Orthologs all Try the new Gene page Try the new Transcripts and proteins table

Genomic context

Go to the top of the page Help See CCDC9B in Genome Data Viewer Location: 15q15.1 Exon count: 11
Annotation release Status Assembly Chr Location
RS_2025_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (40331452..40340939, complement)
RS_2025_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (38138324..38147811, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (40623653..40633140, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help Go to reference sequence details

Genomic Sequence: NC_000015.10 Chromosome 15 Reference GRCh38.p14 Primary Assembly NC_060939.1 Chromosome 15 Alternate T2T-CHM13v2.0 NC_000015.9 Chromosome 15 Reference GRCh37.p13 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help See details Tissue-specific circular RNA induction during human fetal development RNA sequencing of total RNA from 20 human tissues HPA RNA-seq normal tissues
  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Elucidation of the BMI1 interactome identifies novel regulatory roles in glioblastoma. Freire-Benéitez V, et al. NAR Cancer, 2021 Mar. PMID 34316702, Free PMC Article
  2. ATPase-Modulated Stress Granules Contain a Diverse Proteome and Substructure. Jain S, et al. Cell, 2016 Jan 28. PMID 26777405, Free PMC Article
  3. A Degradation Motif in STAU1 Defines a Novel Family of Proteins Involved in Inflammation. Gonzalez Quesada Y, et al. Int J Mol Sci, 2022 Sep 30. PMID 36232890, Free PMC Article
  4. Competitive binding of E3 ligases TRIM26 and WWP2 controls SOX2 in glioblastoma. Mahlokozera T, et al. Nat Commun, 2021 Nov 3. PMID 34732716, Free PMC Article
  5. MST1 interactomes profiling across cell death in esophageal squamous cell carcinoma. Zhang L, et al. Med Rev (2021), 2024 Dec. PMID 39664081, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF? Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

  • WI-16206 (e-PCR)
    • UniSTS:83531
  • RH78611 (e-PCR)
    • UniSTS:64371
  • MARC_23447-23448:1027106168:1 (e-PCR)
    • UniSTS:268700

Homology

  • NCBI Orthologs
    • Orthologs from OrthoDB

Clone Names

  • FLJ43339, DKFZp686N1468

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA binding HDA more info PubMed 

General protein information

Go to the top of the page Help Preferred Names coiled-coil domain-containing protein 9B Names uncharacterized protein C15orf52

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207380.3 → NP_997263.3  coiled-coil domain-containing protein 9B

    Status: VALIDATED

    Source sequence(s) AC013356 Consensus CDS CCDS10055.3 UniProtKB/Swiss-Prot B9EIQ8, Q68DG9, Q6ZTM3, Q6ZU22, Q6ZUT6 Related ENSP00000380670.3, ENST00000397536.7 Conserved Domains (1) summary pfam15266Location:139 → 305 DUF4594; Domain of unknown function (DUF4594)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2025_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range 40331452..40340939 complement Download GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range 38138324..38147811 complement Download GenBank, FASTA, Sequence Viewer (Graphics)
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Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6ZUT6.1 GenPept UniProtKB/Swiss-Prot:Q6ZUT6
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Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
  • Bgee database
    • CCDC9B gene expression
  • BioGPS
    • BioGPS
  • BioGRID Open Repository of CRISPR Screens (ORCS)
    • BioGRID CRISPR Screen Phenotypes (13 hits/1308 screens)
  • CTD: Comparative Toxicogenomics Database
    • CTD: Comparative Toxicogenomics Database - CCDC9B
  • GlyGen glycoinformatics resource
    • GlyGen glycoinformatics resource
  • Human eFP Browser
    • Human eFP Browser
    • Human eFP Browser
    • Human eFP Browser
  • Ingenuity Pathways Analysis
    • Ingenuity Pathways Analysis
  • InnateDB
    • InnateDB
  • InterMine
    • InterMine
  • Kyoto Encyclopedia of Genes and Genomes
    • Kyoto Encyclopedia of Genes and Genomes
  • OMA Browser: Orthologous MAtrix
    • OMA Browser: Orthologous MAtrix
    • OMA Browser: Orthologous MAtrix
  • OrthoDB catalog of orthologs
    • Orthologs
  • PhosphoSitePlus
    • PhosphoSitePlus® - comprehensive post-translational modification resource
  • The Weizmann Institute of Science GeneCards and MalaCards databases
    • GeneCard for CCDC9B
Research Materials
  • Addgene Non-profit plasmid repository
    • Get Plasmids - Addgene
  • Bio-Techne
    • CCDC9B Proteins
    • CCDC9B Lysates
    • CCDC9B Antibodies
  • Creative Biogene
    • coiled-coil domain containing 9B
  • ExactAntigen/Labome
    • reagents
  • GenScript latest version of gene cDNA ORF Clone
    • GenScript latest version of gene cDNA ORF Clone
  • GeneCopoeia Inc.
    • Order TALEN/CRISPR clones
    • Order miRNA target clones
    • Order full-length ORF clone
  • OriGene Technologies
    • Order GeneID 388115 cDNA Clone|Lysate|Protein|Antibody|RNAi
Tools
  • GeneMANIA
    • GeneMANIA
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Supplemental Content

Table of contents

  • Summary
  • Genomic context
  • Genomic regions, transcripts, and products
  • Expression
  • Bibliography
  • Phenotypes
  • Variation
  • Interactions
  • General gene information Markers, Clone Names, Homology, Gene Ontology
  • General protein information
  • NCBI Reference Sequences (RefSeq)
  • Related sequences
  • Additional links

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Related information

  • Order cDNA clone Order cDNA clone
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  • BioAssay by Target (Summary) Summarized PubChem Data on the gene, showing the active data by default
  • BioAssay, by Gene target PubChem BioAssays done on the Gene target
  • BioAssays, RNAi Target, Active BioAssays that contain the gene as the target of a RNAi reagent, which is identified as a hit in a RNAi screening and flagged as "active" in the corresponding BioAssay record
  • BioAssays, RNAi Target, Tested BioAssays that contain the gene as the target of a RNAi reagent
  • BioProjects BioProjects related to a gene
  • CCDS Link to CCDS
  • ClinVar Related medical variations
  • Conserved Domains Related CDD
  • dbVar Link from Gene to dbVar
  • Full text in PMC PMC links
  • Full text in PMC_nucleotide Full text in PubMedCentral identified from shared sequence links
  • Functional Class Functional class of the sequence domain architecture
  • Gene neighbors Overlapping genes and two nearest non-overlapping genes on either side
  • Genome Related Genome
  • GEO Profiles Related GEO
  • GTR Tests for this gene in the NIH Genetic Testing Registry
  • HomoloGene Related HomoloGene
  • Nucleotide Link to related Nucleotide entry
  • Protein Link to related protein entry
  • PubChem Compound PubChem Compounds
  • PubChem Substance PubChem Substances
  • PubMed Link to related PubMed entry
  • PubMed(nucleotide/PMC) Citations in PubMed identified from shared sequence and PMC links.
  • RefSeq Proteins Link to Protein RefSeqs
  • RefSeq RNAs Link to Nucleotide RefSeq RNAs
  • SNP Related SNP records
  • Taxonomy Link to related taxonomy entry
  • Variation Viewer Related Variants

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