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| Scope: Self Platform Samples Series Family Format: HTML SOFT MINiML Amount: Brief Quick GEO accession: |  |
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| Sample GSM342173 | Query DataSets for GSM342173 |
| | Status | Public on Nov 03, 2009 | | Title | NPC19 | | Sample type | RNA | | Source name | biopsy of undifferentiated NPC | | Organism | Homo sapiens | | Characteristics | disease state: Nasopharyngeal carcinomastage: IVA, T4, N2b, M0, G4 | | Extracted molecule | total RNA | | Extraction protocol | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK). | | Label | biotin | | Label protocol | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols. | | Hybridization protocol | Affymetrix Standard protocol | | Scan protocol | Affymetrix Standard protocol | | Description | Stage IVA, T4, N2b, M0, G4 | | Data processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100. | | Submission date | Nov 13, 2008 | | Last update date | Mar 29, 2010 | | Contact name | Wenbin Wei | | E-mail(s) | [email protected] | | Organization name | Durham University | | Department | Biosciences | | Street address | Stockton Road | | City | Durham | | ZIP/Postal code | DH1 3LE | | Country | United Kingdom | | Platform ID | GPL96 | | Series (1) | | GSE13597 | Expression data from biopsies of Nasopharyngeal carcinoma (NPC) and non-malignant controls |
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| Data table header descriptions | | ID_REF | | VALUE | Signal | | ABS_CALL | indicating whether the transcript was present (P), absent (A), or marginal (M) | | DETECTION P-VALUE |
| Data table | | ID_REF | VALUE | ABS_CALL | DETECTION P-VALUE | | AFFX-BioB-5_at | 88.9072 | P | 0.00499819 | | AFFX-BioB-M_at | 144.372 | P | 0.000581214 | | AFFX-BioB-3_at | 53.7141 | P | 0.0044838 | | AFFX-BioC-5_at | 245.543 | P | 0.000146581 | | AFFX-BioC-3_at | 179.557 | P | 0.000224668 | | AFFX-BioDn-5_at | 200.277 | P | 0.000340305 | | AFFX-BioDn-3_at | 1159.32 | P | 8.14279e-05 | | AFFX-CreX-5_at | 2319.87 | P | 4.42873e-05 | | AFFX-CreX-3_at | 3880.37 | P | 4.42873e-05 | | AFFX-DapX-5_at | 9.88933 | A | 0.41138 | | AFFX-DapX-M_at | 13.14 | A | 0.287743 | | AFFX-DapX-3_at | 1.24251 | A | 0.981719 | | AFFX-LysX-5_at | 8.83552 | A | 0.58862 | | AFFX-LysX-M_at | 3.62005 | A | 0.749204 | | AFFX-LysX-3_at | 2.96268 | A | 0.227636 | | AFFX-PheX-5_at | 0.622799 | A | 0.990663 | | AFFX-PheX-M_at | 2.29786 | A | 0.631562 | | AFFX-PheX-3_at | 23.9546 | A | 0.205732 | | AFFX-ThrX-5_at | 2.35924 | A | 0.659339 | | AFFX-ThrX-M_at | 1.01294 | A | 0.868639 |
Total number of rows: 22283Table truncated, full table size 668 Kbytes.| Supplementary file | Size | Download | File type/resource | | GSM342173.CEL.gz | 3.0 Mb | (ftp)(http) | CEL | | GSM342173.CHP.gz | 120.7 Kb | (ftp)(http) | CHP | | Processed data included within Sample table | | Processed data provided as supplementary file |
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