HG-2288 - Human Genome Issues - Genome Reference Consortium

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Human Genome Issue HG-2288 Summary:Restoring component dropped from GRCh38 Description:Component FP565325.3 inadvertently dropped from GRCh38 restored to TPF Status: Resolved (GRC Resolved by Electronic Means) Type: Clone Problem Last updated:2024-04-12 Affects version: GRCh38 Fix version: GRCh39, GRCh38.p2 Resolution: Component FP565325.3 has been restored to the TPF flanking the gap referenced in JIRA ticket HG-1525

Patches and alternate loci

Scaffold type: FIX patch to GRCh38 Comment:This sequence will be incorporated into the reference assembly in the next major assembly release. At that time, the accession number for this patch will be made secondary to the reference chromosome accession. This scaffold restores component FP565325.3 to the reference assembly and removes an artificial duplication in GRCh38 caused by WGS component AUXG01000135.1, restoring an overlap between components BX537329.2 and AL161774.49. Revision history of patches and alts for HG-2288

Assembly	Scaffold type	Contig name	GenBank accession	RefSeq accession	Region
GRCh38.p3	FIX	HG2288_HG2289_PATCH	KN538371.1	NW_011332698.1	REGION209

Locations and genomic context

Select a placement below to display it in the Sequence Viewer.

• GRCh38.p14 chr13:113,966,829-113,972,537 (View region: Ensembl | NCBI | UCSC)
• GRCh38.p14 chr13|NW_011332698.1:29,854-35,563
• GRCh37.p13 chr13:114,739,950-114,741,948 (View region: Ensembl | NCBI | UCSC)

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