Jinbo Xu - OpenReview

Toggle navigationOpenReview.net

• Login

Names

Jinbo Xu (Preferred)

• Suggest Name

Emails

****@gmail.com (Confirmed)

• Suggest Email

Personal Links

Homepage Google Scholar

• Suggest URL

Career & Education History

Full ProfessorToyota Technological Institute at Chicago (ttic.edu)2005 – Present PostdocMassachusetts Institute of Technology (mit.edu)2004 – 2005 PhD studentUniversity of Waterloo (uwaterloo.ca)1999 – 2004 

• Suggest Position

Advisors, Relations & Conflicts

CoauthorJinbo Xu1998 – 2024 

• Suggest Relation

Expertise

optimization, computational biologyPresent graphical models, structure learningPresent deep learning, RNNs, dependency parsingPresent 

• Suggest Expertise

Publications

• From Supervision to Exploration: What Does Protein Language Model Learn During Reinforcement Learning?

  Hanqun Cao, Hongrui Zhang, Junde Xu, Zhou Zhang, Lingdong Shen, Minghao Sun, Ge Liu, Jinbo Xu, Wu-Jun Li, Jinren Ni, Cesar de la Fuente-Nunez, Tianfan Fu, Yejin Choi, Pheng-Ann Heng, Fang Wu
  • ICLR 2026 Conference Desk Rejected Submission
  • Readers: Everyone

• Monte Carlo Tree Diffusion with Multiple Experts for Protein Design

  Xuefeng Liu, Mingxuan Cao, Songhao Jiang, Xiao Luo, Xiaotian Duan, Mengdi Wang, Tobin R. Sosnick, Jinbo Xu, Rick L. Stevens
  • AI4D3 2025 Poster
  • Readers: Everyone

• Scaffold-Driven GPT Model for Drug Optimization

  Xuefeng Liu, Songhao Jiang, Ian Foster, Jinbo Xu, Rick L. Stevens
  • GenBio 2025 Poster
  • Readers: Everyone

• Retrieval Augmented Zero-Shot Enzyme Generation for Specified Substrate

  Jiahe Du, Kaixiong Zhou, Xinyu Hong, Zhaozhuo Xu, Jinbo Xu, Xiao Huang
  • ICML 2025 poster
  • Readers: Everyone

• Surface-based Peptide Design with Multi-modal Flow Matching

  Fang Wu, Shuting Jin, xiangxiang Zeng, Jure Leskovec, Jinbo Xu
  • Submitted to ICLR 2025
  • Readers: Everyone

• SurfDesign: Effective Protein Design on Molecular Surfaces

  Fang Wu, Shuting Jin, Jianmin Wang, Zerui Xu, xiangxiang Zeng, Jinbo Xu, Brian Hie
  • Submitted to ICLR 2025
  • Readers: Everyone

• Retrieval Augmented Zero-Shot Enzyme Generation for Specified Substrate

  Jiahe Du, Kaixiong Zhou, Xinyu Hong, Zhaozhuo Xu, Jinbo Xu, Xiao Huang
  • Submitted to ICLR 2025
  • Readers: Everyone

• Bridging Sequence and Structure: Latent Diffusion for Conditional Protein Generation

  Matt McPartlon, Céline Marquet, Tomas Geffner, Daniel Kovtun, Alexander Goncearenco, Zachary Carpenter, Luca Naef, Michael M. Bronstein, Jinbo Xu
  • Submitted to ICLR 2024
  • Readers: Everyone

• Learning structured densities via infinite dimensional exponential families

  Siqi Sun, Mladen Kolar, Jinbo Xu
  • 2015 (modified: 11 Nov 2022)
  • NIPS 2015
  • Readers: Everyone

• Learning Scale-Free Networks by Dynamic Node Specific Degree Prior

  Qingming Tang, Siqi Sun, Jinbo Xu
  • 2015 (modified: 11 Nov 2022)
  • ICML 2015
  • Readers: Everyone

View all 11 publications

Co-Authors

• Alexander Goncearenco
• Brian Hie
• Cesar de la Fuente-Nunez
• Céline Marquet
• Daniel Kovtun
• Fang Wu
• Ge Liu
• Hanqun Cao
• Hongrui Zhang
• Ian Foster
• Jiahe Du
• Jian Peng
• Jianmin Wang
• Jinren Ni
• Junde Xu
• Jure Leskovec
• Kaixiong Zhou
• Liefeng Bo
• Lingdong Shen
• Luca Naef
• Matt McPartlon
• Mengdi Wang
• Michael M. Bronstein
• Minghao Sun
• Mingxuan Cao

View all 47 co-authors

OpenReview is a long-term project to advance science through improved peer review with legal nonprofit status. We gratefully acknowledge the support of the OpenReview Sponsors. © 2026 OpenReview