Jinbo Xu - OpenReview

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Names

Jinbo Xu (Preferred)

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Emails

****@gmail.com (Confirmed)

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Personal Links

Homepage Google Scholar

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Career & Education History

Full ProfessorToyota Technological Institute at Chicago (ttic.edu)2005 – Present PostdocMassachusetts Institute of Technology (mit.edu)2004 – 2005 PhD studentUniversity of Waterloo (uwaterloo.ca)1999 – 2004 

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Advisors, Relations & Conflicts

CoauthorJinbo Xu1998 – 2024 

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Expertise

optimization, computational biologyPresent graphical models, structure learningPresent deep learning, RNNs, dependency parsingPresent 

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Publications

• Monte Carlo Tree Diffusion with Multiple Experts for Protein Design

  Xuefeng Liu, Mingxuan Cao, Songhao Jiang, Xiao Luo, Xiaotian Duan, Mengdi Wang, Tobin R. Sosnick, Jinbo Xu, Rick L. Stevens
  • AI4D3 2025 Poster
  • Readers: Everyone

• Scaffold-Driven GPT Model for Drug Optimization

  Xuefeng Liu, Songhao Jiang, Ian Foster, Jinbo Xu, Rick L. Stevens
  • GenBio 2025 Poster
  • Readers: Everyone

• Retrieval Augmented Zero-Shot Enzyme Generation for Specified Substrate

  Jiahe Du, Kaixiong Zhou, Xinyu Hong, Zhaozhuo Xu, Jinbo Xu, Xiao Huang
  • ICML 2025 poster
  • Readers: Everyone

• Surface-based Peptide Design with Multi-modal Flow Matching

  Fang Wu, Shuting Jin, xiangxiang Zeng, Jure Leskovec, Jinbo Xu
  • Submitted to ICLR 2025
  • Readers: Everyone

• SurfDesign: Effective Protein Design on Molecular Surfaces

  Fang Wu, Shuting Jin, Jianmin Wang, Zerui Xu, xiangxiang Zeng, Jinbo Xu, Brian Hie
  • Submitted to ICLR 2025
  • Readers: Everyone

• Retrieval Augmented Zero-Shot Enzyme Generation for Specified Substrate

  Jiahe Du, Kaixiong Zhou, Xinyu Hong, Zhaozhuo Xu, Jinbo Xu, Xiao Huang
  • Submitted to ICLR 2025
  • Readers: Everyone

• Bridging Sequence and Structure: Latent Diffusion for Conditional Protein Generation

  Matt McPartlon, Céline Marquet, Tomas Geffner, Daniel Kovtun, Alexander Goncearenco, Zachary Carpenter, Luca Naef, Michael M. Bronstein, Jinbo Xu
  • Submitted to ICLR 2024
  • Readers: Everyone

• Learning structured densities via infinite dimensional exponential families

  Siqi Sun, Mladen Kolar, Jinbo Xu
  • 2015 (modified: 11 Nov 2022)
  • NIPS 2015
  • Readers: Everyone

• Learning Scale-Free Networks by Dynamic Node Specific Degree Prior

  Qingming Tang, Siqi Sun, Jinbo Xu
  • 2015 (modified: 11 Nov 2022)
  • ICML 2015
  • Readers: Everyone

• Conditional Neural Fields

  Jian Peng, Liefeng Bo, Jinbo Xu
  • 2009 (modified: 11 Nov 2022)
  • NIPS 2009
  • Readers: Everyone

Co-Authors

• Alexander Goncearenco
• Brian Hie
• Céline Marquet
• Daniel Kovtun
• Fang Wu
• Ian Foster
• Jiahe Du
• Jian Peng
• Jianmin Wang
• Jure Leskovec
• Kaixiong Zhou
• Liefeng Bo
• Luca Naef
• Matt McPartlon
• Mengdi Wang
• Michael M. Bronstein
• Mingxuan Cao
• Mladen Kolar
• Qingming Tang
• Rick L. Stevens
• Shuting Jin
• Siqi Sun
• Songhao Jiang
• Tobin R. Sosnick
• Tomas Geffner

View all 34 co-authors

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