Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox. HelpContact us
Toggle navigationRCSB PDB
- Deposit
Prepare Data
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
Validate Data
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
Deposit Data
- wwPDB OneDep System
- PDB-IHM
Help and Resources
- Deposit FAQ
- Validation FAQ
- Tutorials
- Annotation Policies
- Processing Procedures
- PDBx/mmCIF Dictionary
- PDBx/mmCIF User Guide
- Chemical Component Dictionary
- Biologically Interesting Molecule Reference Dictionary (BIRD)
- BioSync/Beamlines/Facilities
- Related Tools
- Search
- Advanced Search
- Sequence Similarity Search
- 3D Similarity Search
- Chemical Similarity Search
- Browse by Annotations
- New Entries
- Unreleased Entries
- PDB Statistics
- Visualize
- Mol* (MolStar)
- Sequence Annotations Viewer
- Genome View
- Analyze
- Pairwise Structure Alignment
- Symmetry Resources in the PDB
- Structure Quality
- Grouping Structures
- PDB Citation MeSH Network Explorer
- PDB Statistics
- EPPIC Biological Assemblies
- External Data and Resources
- Integrated Resources
- Additional Resources
- Download
- Coordinates and Experimental Data
- Sequences
- Ligands
- File Download Services
- Web APIs
- Learn

- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
- About
- Contact Us
- About RCSB PDB
- Vision and Mission
- Citation, Usage, Privacy Policies, Logo
- News
- PDB History
- PDB50
- User Community
- Publications
- RCSB PDB Advisory Committee
- Team Members
- Service Status
- Careers
- COVID-19
 | |
 Display Files
- Definition (CIF Format)
- Structure Data File (Ideal SDF)
 Download Files
- Definition (CIF Format)
- Structure Data File (Ideal SDF)
Data API K0T
(2~{S})-5-carbamimidamido-2-[[(2~{S})-2-[[(2~{S})-1-[5-(dimethylamino)naphthalen-1-yl]sulfonylpiperidin-2-yl]carbonylamino]-4-phenyl-butanoyl]amino]pentanoic acid
| Created: | 2019-04-12 |
| Last modified: | 2020-05-13 |
Find Related PDB Entry |
|---|
| 1 entries where K0T is found as a standalone ligand |
Chemical Details |
|---|
| Formal Charge | 0 |
|---|
| Atom Count | 93 |
|---|
| Chiral Atom Count | 3 |
|---|
| Bond Count | 96 |
|---|
| Aromatic Bond Count | 17 |
|---|

Toggle HydrogenToggle Labels
Chemical Component Summary |
|---|
| Name | (2~{S})-5-carbamimidamido-2-[[(2~{S})-2-[[(2~{S})-1-[5-(dimethylamino)naphthalen-1-yl]sulfonylpiperidin-2-yl]carbonylamino]-4-phenyl-butanoyl]amino]pentanoic acid |
|---|
| Systematic Name (OpenEye OEToolkits) | (2~{S})-5-carbamimidamido-2-[[(2~{S})-2-[[(2~{S})-1-[5-(dimethylamino)naphthalen-1-yl]sulfonylpiperidin-2-yl]carbonylamino]-4-phenyl-butanoyl]amino]pentanoic acid |
|---|
| Formula | C34 H45 N7 O6 S |
|---|
| Molecular Weight | 679.829 |
|---|
| Type | NON-POLYMER |
|---|
Chemical Descriptors |
|---|
| Type | Program | Version | Descriptor |
|---|
| SMILES | CACTVS | 3.385 | CN(C)c1cccc2c1cccc2[S](=O)(=O)N3CCCC[CH]3C(=O)N[CH](CCc4ccccc4)C(=O)N[CH](CCCNC(N)=N)C(O)=O |
| SMILES | OpenEye OEToolkits | 2.0.7 | CN(C)c1cccc2c1cccc2S(=O)(=O)N3CCCCC3C(=O)NC(CCc4ccccc4)C(=O)NC(CCCNC(=N)N)C(=O)O |
| Canonical SMILES | CACTVS | 3.385 | CN(C)c1cccc2c1cccc2[S](=O)(=O)N3CCCC[C@H]3C(=O)N[C@@H](CCc4ccccc4)C(=O)N[C@@H](CCCNC(N)=N)C(O)=O |
| Canonical SMILES | OpenEye OEToolkits | 2.0.7 | [H]/N=C(/N)\NCCC[C@@H](C(=O)O)NC(=O)[C@H](CCc1ccccc1)NC(=O)[C@@H]2CCCCN2S(=O)(=O)c3cccc4c3cccc4N(C)C |
| InChI | InChI | 1.03 | InChI=1S/C34H45N7O6S/c1-40(2)28-17-8-14-25-24(28)13-9-18-30(25)48(46,47)41-22-7-6-16-29(41)32(43)38-26(20-19-23-11-4-3-5-12-23)31(42)39-27(33(44)45)15-10-21-37-34(35)36/h3-5,8-9,11-14,17-18,26-27,29H,6-7,10,15-16,19-22H2,1-2H3,(H,38,43)(H,39,42)(H,44,45)(H4,35,36,37)/t26-,27-,29-/m0/s1 |
| InChIKey | InChI | 1.03 | MKNCAFDCRIGOAN-YCVJPRETSA-N |
Related Resource References
| Resource Name | Reference |
|---|
| PubChem | 146035551 |
- About
- About Us
- Citing Us
- Publications
- Team
- Careers
- Usage & Privacy
- Support
- Contact Us
- Help
- Website FAQ
- Glossary
- Service Status
- RCSB PDB is a member of
- RCSB Partners
- Nucleic Acid Knowledgebase
- wwPDB Partners
- RCSB PDB
- PDBe
- PDBj
- BMRB
- EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.