Xiang-Qun Xie - Dblp

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2025
[j27]
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  - journals/cbm/SunLZHCHLXF25
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Ze-Yu Sun, Tianjian Liang, Yiyang Zhang, Ganqian Hou, Xiaojie Chu, Jing-Zhou Hou, Wei Li, Xiang-Qun Xie, Zhiwei Feng: Structural insight into CD20/CD3-bispecific antibodies by molecular modeling. Comput. Biol. Medicine 185: 109497 (2025)
2024
[j26]
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  - journals/bib/LiangSHPHCMDXLF24
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  - https://dblp.org/rec/journals/bib/LiangSHPHCMDXLF24
Tianjian Liang, Ze-Yu Sun, Margaret G. Hines, Kerri Jo Penrose, Yixuan Hao, Xiaojie Chu, John W. Mellors, Dimiter S. Dimitrov, Xiang-Qun Xie, Wei Li, Zhiwei Feng: AI-based IsAb2.0 for antibody design. Briefings Bioinform. 25(5) (2024)
2023
[j25]
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  - journals/cbm/ManHNSRXW23
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Viet Hoang Man, Xibing He, Phuong H. Nguyen, Celeste Sagui, Christopher Roland, Xiang-Qun Xie, Junmei Wang: Unpolarized laser method for infrared spectrum calculation of amide I C=O bonds in proteins using molecular dynamics simulation. Comput. Biol. Medicine 159: 106902 (2023)
2022
[j24]
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  - journals/bib/LiangJYOXF22
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Tianjian Liang, Chen Jiang, Jiayi Yuan, Yasmin Othman, Xiang-Qun Xie, Zhiwei Feng: Differential performance of RoseTTAFold in antibody modeling. Briefings Bioinform. 23(5) (2022)
2021
[j23]
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  - journals/bib/FengCLSCX21
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Zhiwei Feng, Maozi Chen, Tianjian Liang, Mingzhe Shen, Hui Chen, Xiang-Qun Xie: Virus-CKB: an integrated bioinformatics platform and analysis resource for COVID-19 research. Briefings Bioinform. 22(2): 882-895 (2021)
[j22]
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Zhiwei Feng, Maozi Chen, Ying Xue, Tianjian Liang, Hui Chen, Yuehan Zhou, Thomas D. Nolin, Randall B. Smith, Xiang-Qun Xie: MCCS: a novel recognition pattern-based method for fast track discovery of anti-SARS-CoV-2 drugs. Briefings Bioinform. 22(2): 946-962 (2021)
[j21]
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  - journals/bib/ChenFWLX21
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Maozi Chen, Zhiwei Feng, Siyi Wang, Weiwei Lin, Xiang-Qun Xie: MCCS, a novel characterization method for protein-ligand complex. Briefings Bioinform. 22(4) (2021)
[j20]
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  - journals/bib/LiangCYJHWFX21
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Tianjian Liang, Hui Chen, Jiayi Yuan, Chen Jiang, Yixuan Hao, Yuanqiang Wang, Zhiwei Feng, Xiang-Qun Xie: IsAb: a computational protocol for antibody design. Briefings Bioinform. 22(5) (2021)
2020
[j19]
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Zhiwei Feng, Maozi Chen, Mingzhe Shen, Tianjian Liang, Hui Chen, Xiang-Qun Xie: Pain-CKB, A Pain-Domain-Specific Chemogenomics Knowledgebase for Target Identification and Systems Pharmacology Research. J. Chem. Inf. Model. 60(10): 4429-4435 (2020)
[i1]
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  - journals/corr/abs-2008-09000
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Yuemin Bian, Xiang-Qun Xie: Generative chemistry: drug discovery with deep learning generative models. CoRR abs/2008.09000 (2020)

2019
[j18]
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  - journals/jcamd/HeMJXW19
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Xibing He, Viet Hoang Man, Beihong Ji, Xiang-Qun Xie, Junmei Wang: Calculate protein-ligand binding affinities with the extended linear interaction energy method: application on the Cathepsin S set in the D3R Grand Challenge 3. J. Comput. Aided Mol. Des. 33(1): 105-117 (2019)
[j17]
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Haixia Ge, Yuemin Bian, Xibing He, Xiang-Qun Xie, Junmei Wang: Significantly different effects of tetrahydroberberrubine enantiomers on dopamine D1/D2 receptors revealed by experimental study and integrated in silico simulation. J. Comput. Aided Mol. Des. 33(4): 447-459 (2019)
[j16]
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  - journals/jcisd/WangGX19
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Junmei Wang, Yubin Ge, Xiang-Qun Xie: Development and Testing of Druglike Screening Libraries. J. Chem. Inf. Model. 59(1): 53-65 (2019)
[j15]
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Maozi Chen, Yankang Jing, Lirong Wang, Zhiwei Feng, Xiang-Qun Xie: DAKB-GPCRs: An Integrated Computational Platform for Drug Abuse Related GPCRs. J. Chem. Inf. Model. 59(4): 1283-1289 (2019)
2017
[j14]
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  - journals/jcisd/ChenFWMHYCX17
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Si Chen, Zhiwei Feng, Yun Wang, Shifan Ma, Ziheng Hu, Peng Yang, Yifeng Chai, Xiang-Qun Xie: Discovery of Novel Ligands for TNF-α and TNF Receptor-1 through Structure-Based Virtual Screening and Biological Assay. J. Chem. Inf. Model. 57(5): 1101-1111 (2017)
[j13]
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Nanyi Wang, Lirong Wang, Xiang-Qun Xie: ProSelection: A Novel Algorithm to Select Proper Protein Structure Subsets for in Silico Target Identification and Drug Discovery Research. J. Chem. Inf. Model. 57(11): 2686-2698 (2017)
2016
[j12]
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  - journals/jcisd/HuFMZTAGX16
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Jianping Hu, Zhiwei Feng, Shifan Ma, Yu Zhang, Qin Tong, Mohammed Hamed Alqarni, Xiaojun Gou, Xiang-Qun Xie: Difference and Influence of Inactive and Active States of Cannabinoid Receptor Subtype CB2: From Conformation to Drug Discovery. J. Chem. Inf. Model. 56(6): 1152-1163 (2016)
[j11]
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Yu Zhang, Lirong Wang, Zhiwei Feng, Haizi Cheng, Terence Francis McGuire, Yahui Ding, Tao Cheng, Yingdai Gao, Xiang-Qun Xie: StemCellCKB: An Integrated Stem Cell-Specific Chemogenomics KnowledgeBase for Target Identification and Systems-Pharmacology Research. J. Chem. Inf. Model. 56(10): 1995-2004 (2016)
2015
[j10]
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  - journals/jcisd/FengPXYYBX15
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Zhiwei Feng, Larry V. Pearce, Xiaomeng Xu, Xiaole Yang, Peng Yang, Peter M. Blumberg, Xiang-Qun Xie: Structural Insight into Tetrameric hTRPV1 from Homology Modeling, Molecular Docking, Molecular Dynamics Simulation, Virtual Screening, and Bioassay Validations. J. Chem. Inf. Model. 55(3): 572-588 (2015)
2014
[j9]
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  - journals/jcisd/LiuWLPLPWSX14
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Haibin Liu, Lirong Wang, Mingliang Lv, Rongrong Pei, Peibo Li, Zhong Pei, Yonggang Wang, Weiwei Su, Xiang-Qun Xie: AlzPlatform: An Alzheimer's Disease Domain-Specific Chemogenomics Knowledgebase for Polypharmacology and Target Identification Research. J. Chem. Inf. Model. 54(4): 1050-1060 (2014)
[j8]
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  - journals/jcisd/FengAYTCWX14
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Zhiwei Feng, Mohammed Hamed Alqarni, Peng Yang, Qin Tong, Ananda Chowdhury, Lirong Wang, Xiang-Qun Xie: Modeling, Molecular Dynamics Simulation, and Mutation Validation for Structure of Cannabinoid Receptor 2 Based on Known Crystal Structures of GPCRs. J. Chem. Inf. Model. 54(9): 2483-2499 (2014)
2013
[j7]
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  - journals/jcisd/MaWYMX13
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Chao Ma, Lirong Wang, Peng Yang, Kyaw Z. Myint, Xiang-Qun Xie: LiCABEDS II. Modeling of Ligand Selectivity for G-Protein-Coupled Cannabinoid Receptors. J. Chem. Inf. Model. 53(1): 11-26 (2013)
2011
[j6]
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Chao Ma, Lirong Wang, Xiang-Qun Xie: Ligand Classifier of Adaptively Boosting Ensemble Decision Stumps (LiCABEDS) and Its Application on Modeling Ligand Functionality for 5HT-Subtype GPCR Families. J. Chem. Inf. Model. 51(3): 521-531 (2011)
[j5]
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Lirong Wang, Zhaojun Xie, Peter Wipf, Xiang-Qun Xie: Residue Preference Mapping of Ligand Fragments in the Protein Data Bank. J. Chem. Inf. Model. 51(4): 807-815 (2011)
[j4]
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Chao Ma, Lirong Wang, Xiang-Qun Xie: GPU Accelerated Chemical Similarity Calculation for Compound Library Comparison. J. Chem. Inf. Model. 51(7): 1521-1527 (2011)

2008
[j3]
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Xiang-Qun Xie, Jian-zhong Chen: Data Mining a Small Molecule Drug Screening Representative Subset from NIH PubChem. J. Chem. Inf. Model. 48(3): 465-475 (2008)
2007
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Jian-zhong Chen, Junmei Wang, Xiang-Qun Xie: GPCR Structure-Based Virtual Screening Approach for CB2 Antagonist Search. J. Chem. Inf. Model. 47(4): 1626-1637 (2007)
2006
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Junmei Wang, George Krudy, Xiang-Qun Xie, Chengde Wu, George Holland: Genetic Algorithm-Optimized QSPR Models for Bioavailability, Protein Binding, and Urinary Excretion. J. Chem. Inf. Model. 46(6): 2674-2683 (2006)

Mohammed Hamed Alqarni[j12] [j8] 2

Yuemin Bian[i1] [j17] 3

Peter M. Blumberg[j10] 4

Yifeng Chai[j14] 5

Hui Chen[j23] [j22] [j20] [j19] 6

Jianzhong Chenaka: Jian-zhong Chen[j3] [j2] 7

Maozi Chen[j23] [j22] [j21] [j19] [j15] 8

Si Chen[j14] 9

Haizi Cheng[j11] 10

Tao Cheng[j11] 11

Ananda Chowdhury[j8] 12

Xiaojie Chu[j27] [j26] 13

Dimiter S. Dimitrov[j26] 14

Yahui Ding[j11] 15

Zhiwei Feng[j27] [j26] [j24] [j23] [j22] [j21] [j20] [j19] [j15] [j14] [j12] [j11] [j10] [j8] 16

Yingdai Gao[j11] 17

Haixia Ge[j17] 18

Yubin Ge[j16] 19

Xiaojun Gou[j12] 20

Yixuan Hao[j26] [j20] 21

Xibing He[j25] [j18] [j17] 22

Margaret G. Hines[j26] 23

George Holland[j1] 24

Ganqian Hou[j27] 25

Jing-Zhou Hou[j27] 26

Jianping Hu[j12] 27

Ziheng Hu[j14] 28

Beihong Ji[j18] 29

Chen Jiang[j24] [j20] 30

Yankang Jing[j15] 31

George Krudy[j1] 32

Peibo Li[j9] 33

Wei Li[j27] [j26] 34

Tianjian Liang[j27] [j26] [j24] [j23] [j22] [j20] [j19] 35

Weiwei Lin[j21] 36

Haibin Liu[j9] 37

Mingliang Lv[j9] 38

Chao Ma[j7] [j6] [j4] 39

Shifan Ma[j14] [j12] 40

Viet Hoang Man[j25] [j18] 41

Terence Francis McGuire[j11] 42

John W. Mellors[j26] 43

Kyaw Z. Myint[j7] 44

Phuong H. Nguyen[j25] 45

Thomas D. Nolin[j22] 46

Yasmin Othman[j24] 47

Larry V. Pearce[j10] 48

Rongrong Pei[j9] 49

Zhong Pei[j9] 50

Kerri Jo Penrose[j26] 51

Christopher Roland[j25] 52

Celeste Sagui[j25] 53

Mingzhe Shen[j23] [j19] 54

Randall B. Smith[j22] 55

Weiwei Su[j9] 56

Ze-Yu Sun[j27] [j26] 57

Qin Tong[j12] [j8] 58

Junmei Wang[j25] [j18] [j17] [j16] [j2] [j1] 59

Lirong Wang[j15] [j13] [j11] [j9] [j8] [j7] [j6] [j5] [j4] 60

Nanyi Wang[j13] 61

Siyi Wang[j21] 62

Yonggang Wang[j9] 63

Yuanqiang Wang[j20] 64

Yun Wang[j14] 65

Peter Wipf[j5] 66

Chengde Wu[j1] 67

Zhaojun Xie[j5] 68

Xiaomeng Xu[j10] 69

Ying Xue[j22] 70

Peng Yang 0026[j14] [j10] [j8] [j7] 71

Xiaole Yang[j10] 72

Jiayi Yuan[j24] [j20] 73

Yiyang Zhang[j27] 74

Yu Zhang[j12] [j11] 75

Yuehan Zhou[j22]

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