Ccdc9b (coiled-coil Domain Containing 9B) - Rat Genome Database

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Summary Gene: Ccdc9b (coiled-coil domain containing 9B) Rattus norvegicus {{ watchLinkText }} Analyze General Array IDs Symbol: Ccdc9b Name: coiled-coil domain containing 9B RGD ID: 1565536 Description: Orthologous to human CCDC9B (coiled-coil domain containing 9B); INTERACTS WITH aconitine; aflatoxin B1; bisphenol A. Type: protein-coding RefSeq Status: MODEL Previously known as: coiled-coil domain-containing protein 9B; LOC311323; RGD1565536; similar to hypothetical protein RGD Orthologs Human Mouse Chinchilla Bonobo Dog Squirrel Pig Green Monkey Naked Mole-Rat Black Rat Alliance Orthologs More Info more info ... More Info Species Gene symbol and name Data Source Assertion derived from less info ... Orthologs 1 Homo sapiens (human): CCDC9B (coiled-coil domain containing 9B) HGNC EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam Mus musculus (house mouse): Ccdc9b (coiled-coil domain containing 9B) Transitive Ortholog Pipeline Transitive Ortholog Pipeline Chinchilla lanigera (long-tailed chinchilla): Ccdc9b (coiled-coil domain containing 9B) Transitive Ortholog Pipeline Transitive Ortholog Pipeline Pan paniscus (bonobo/pygmy chimpanzee): CCDC9B (coiled-coil domain containing 9B) Transitive Ortholog Pipeline Transitive Ortholog Pipeline Canis lupus familiaris (dog): CCDC9B (coiled-coil domain containing 9B) Transitive Ortholog Pipeline Transitive Ortholog Pipeline Ictidomys tridecemlineatus (thirteen-lined ground squirrel): Ccdc9b (coiled-coil domain containing 9B) Transitive Ortholog Pipeline Transitive Ortholog Pipeline Sus scrofa (pig): CCDC9B (coiled-coil domain containing 9B) Transitive Ortholog Pipeline Transitive Ortholog Pipeline Chlorocebus sabaeus (green monkey): CCDC9B (coiled-coil domain containing 9B) Transitive Ortholog Pipeline Transitive Ortholog Pipeline Heterocephalus glaber (naked mole-rat): Ccdc9b (coiled-coil domain containing 9B) Transitive Ortholog Pipeline Transitive Ortholog Pipeline Rattus rattus (black rat): Ccdc9b (coiled-coil domain containing 9B) Transitive Ortholog Pipeline Transitive Ortholog Pipeline Other homologs 2 Homo sapiens (human): C5orf46 (chromosome 5 open reading frame 46) HGNC OMA Alliance orthologs 3 Homo sapiens (human): CCDC9B (coiled-coil domain containing 9B) Alliance DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid) Mus musculus (house mouse): Ccdc9b (coiled-coil domain containing 9B) Alliance DIOPT (Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid) Caenorhabditis elegans (roundworm): C10G8.8 Alliance DIOPT (Ensembl Compara|PANTHER) Xenopus tropicalis (tropical clawed frog): ccdc9b Alliance DIOPT (Hieranoid|InParanoid|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid) Latest Assembly: GRCr8 - GRCr8 Assembly Position: Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 3 126,190,039 - 126,198,931 (-) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 3 126,192,232 - 126,199,580 (-) Ensembl GRCr8 mRatBN7.2 3 105,736,120 - 105,745,039 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 3 105,739,174 - 105,744,697 (-) Ensembl mRatBN7.2 Rnor_6.0 3 110,548,238 - 110,557,096 (-) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 3 110,551,233 - 110,556,813 (-) Ensembl rn6 Rnor6.0 Rnor_5.0 3 117,088,852 - 117,097,427 (-) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 3 105,260,699 - 105,266,052 (-) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 3 104,650,266 - 104,659,124 (-) NCBI Celera Cytogenetic Map 3 q35 NCBI JBrowse: View Region in Genome Browser (JBrowse) Annotation Click to see Annotation Detail View Gene-Chemical Interaction Annotations Click to see Annotation Detail View 10 20 30 40 100 All Rows Only show annotations with direct experimental evidence (0 objects hidden) Object Symbol Species Term Qualifier Evidence With Reference Notes Source Original Reference(s) Ccdc9b Rat 17beta-estradiol multiple interactions ISO CCDC9B (Homo sapiens) 6480464 [Estradiol co-treated with TGFB1 protein] results in increased expression of CCDC9B mRNA CTD PMID:30165855 Ccdc9b Rat 2,2',4,4'-Tetrabromodiphenyl ether multiple interactions ISO Ccdc9b (Mus musculus) 6480464 [Flame Retardants results in increased abundance of 2,2',4,4'-tetrabromodiphenyl ether] which results in decreased expression of more ... CTD PMID:38995820 Ccdc9b Rat 2,3,7,8-tetrachlorodibenzodioxine increases expression ISO CCDC9B (Homo sapiens) 6480464 Tetrachlorodibenzodioxin results in increased expression of CCDC9B mRNA CTD PMID:20106945|PMID:21802500|PMID:26238291 Ccdc9b Rat aconitine increases expression EXP 6480464 Aconitine results in increased expression of CCDC9B protein CTD PMID:33236894 Ccdc9b Rat aflatoxin B1 increases expression EXP 6480464 Aflatoxin B1 results in increased expression of CCDC9B mRNA CTD PMID:33354967 Ccdc9b Rat all-trans-retinoic acid multiple interactions ISO Ccdc9b (Mus musculus) 6480464 [mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of CCDC9B mRNA CTD PMID:36189433 Ccdc9b Rat benzo[a]pyrene increases expression ISO CCDC9B (Homo sapiens) 6480464 Benzo(a)pyrene results in increased expression of CCDC9B mRNA CTD PMID:20106945|PMID:22316170|PMID:26238291 Ccdc9b Rat benzo[a]pyrene diol epoxide I increases expression ISO CCDC9B (Homo sapiens) 6480464 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide results in increased expression of CCDC9B mRNA CTD PMID:26238291 Ccdc9b Rat bis(2-chloroethyl) sulfide increases expression ISO CCDC9B (Homo sapiens) 6480464 Mustard Gas results in increased expression of CCDC9B mRNA CTD PMID:25102026 Ccdc9b Rat bisphenol A increases expression ISO CCDC9B (Homo sapiens) 6480464 bisphenol A results in increased expression of CCDC9B mRNA CTD PMID:25047013 Ccdc9b Rat bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of CCDC9B mRNA CTD PMID:25181051|PMID:32145629 Ccdc9b Rat C60 fullerene decreases expression EXP 6480464 fullerene C60 results in decreased expression of CCDC9B mRNA CTD PMID:19167457 Ccdc9b Rat cadmium atom multiple interactions ISO Ccdc9b (Mus musculus) 6480464 [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of CCDC9B more ... CTD PMID:37236586 Ccdc9b Rat cadmium dichloride multiple interactions ISO Ccdc9b (Mus musculus) 6480464 [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of CCDC9B more ... CTD PMID:37236586 Ccdc9b Rat calcitriol increases expression ISO CCDC9B (Homo sapiens) 6480464 Calcitriol results in increased expression of CCDC9B mRNA CTD PMID:26485663 Ccdc9b Rat cantharidin decreases expression ISO Ccdc9b (Mus musculus) 6480464 Cantharidin results in decreased expression of CCDC9B mRNA CTD PMID:36907384 Ccdc9b Rat cisplatin multiple interactions ISO CCDC9B (Homo sapiens) 6480464 [Cisplatin co-treated with jinfukang] results in increased expression of CCDC9B mRNA CTD PMID:27392435 Ccdc9b Rat cisplatin increases expression ISO Ccdc9b (Mus musculus) 6480464 Cisplatin results in increased expression of CCDC9B mRNA CTD PMID:40618947 Ccdc9b Rat copper(II) sulfate increases expression ISO CCDC9B (Homo sapiens) 6480464 Copper Sulfate results in increased expression of CCDC9B mRNA CTD PMID:19549813 Ccdc9b Rat crotonaldehyde decreases expression ISO CCDC9B (Homo sapiens) 6480464 2-butenal results in decreased expression of CCDC9B mRNA CTD PMID:20471460 Ccdc9b Rat cyclosporin A increases expression ISO CCDC9B (Homo sapiens) 6480464 Cyclosporine results in increased expression of CCDC9B mRNA CTD PMID:20106945|PMID:25562108 Ccdc9b Rat cyclosporin A decreases expression ISO CCDC9B (Homo sapiens) 6480464 Cyclosporine results in decreased expression of CCDC9B mRNA CTD PMID:27989131 Ccdc9b Rat Dibutyl phosphate affects expression ISO CCDC9B (Homo sapiens) 6480464 di-n-butylphosphoric acid affects the expression of CCDC9B mRNA CTD PMID:37042841 Ccdc9b Rat dimethylarsinous acid decreases expression ISO CCDC9B (Homo sapiens) 6480464 dimethylarsinous acid results in decreased expression of CCDC9B mRNA CTD PMID:23487506 Ccdc9b Rat ethanol increases expression ISO Ccdc9b (Mus musculus) 6480464 Ethanol results in increased expression of CCDC9B mRNA CTD PMID:30319688 Ccdc9b Rat folic acid decreases expression ISO CCDC9B (Homo sapiens) 6480464 Folic Acid results in decreased expression of CCDC9B mRNA CTD PMID:21867686 Ccdc9b Rat FR900359 increases phosphorylation ISO CCDC9B (Homo sapiens) 6480464 FR900359 results in increased phosphorylation of CCDC9B protein CTD PMID:37730182 Ccdc9b Rat gentamycin decreases expression EXP 6480464 Gentamicins results in decreased expression of CCDC9B mRNA CTD PMID:33387578 Ccdc9b Rat lipopolysaccharide decreases expression ISO CCDC9B (Homo sapiens) 6480464 Lipopolysaccharides results in decreased expression of CCDC9B mRNA CTD PMID:35811015 Ccdc9b Rat lipopolysaccharide multiple interactions ISO CCDC9B (Homo sapiens) 6480464 [S-(1,2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of CCDC9B mRNA CTD PMID:35811015 Ccdc9b Rat mono(2-ethylhexyl) phthalate multiple interactions ISO Ccdc9b (Mus musculus) 6480464 [mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of CCDC9B mRNA CTD PMID:36189433 Ccdc9b Rat N-methyl-4-phenylpyridinium increases expression EXP 6480464 1-Methyl-4-phenylpyridinium results in increased expression of CCDC9B mRNA CTD PMID:28801915 Ccdc9b Rat paracetamol decreases expression ISO CCDC9B (Homo sapiens) 6480464 Acetaminophen results in decreased expression of CCDC9B mRNA CTD PMID:29067470 Ccdc9b Rat paracetamol decreases expression EXP 6480464 Acetaminophen results in decreased expression of CCDC9B mRNA CTD PMID:33387578 Ccdc9b Rat S-(1,2-dichlorovinyl)-L-cysteine multiple interactions ISO CCDC9B (Homo sapiens) 6480464 [S-(1,2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of CCDC9B mRNA CTD PMID:35811015 Ccdc9b Rat sunitinib decreases expression ISO CCDC9B (Homo sapiens) 6480464 Sunitinib results in decreased expression of CCDC9B mRNA CTD PMID:31533062 Ccdc9b Rat temozolomide decreases expression ISO CCDC9B (Homo sapiens) 6480464 Temozolomide results in decreased expression of CCDC9B mRNA CTD PMID:31758290 Ccdc9b Rat tetrachloromethane increases expression EXP 6480464 Carbon Tetrachloride results in increased expression of CCDC9B mRNA CTD PMID:31150632 Ccdc9b Rat trichloroethene decreases expression EXP 6480464 Trichloroethylene results in decreased expression of CCDC9B mRNA CTD PMID:33387578 Ccdc9b Rat triphenyl phosphate affects expression ISO CCDC9B (Homo sapiens) 6480464 triphenyl phosphate affects the expression of CCDC9B mRNA CTD PMID:37042841 Ccdc9b Rat urethane decreases expression ISO CCDC9B (Homo sapiens) 6480464 Urethane results in decreased expression of CCDC9B mRNA CTD PMID:28818685 Ccdc9b Rat valproic acid decreases expression ISO CCDC9B (Homo sapiens) 6480464 Valproic Acid results in decreased expression of CCDC9B mRNA CTD PMID:29154799 Ccdc9b Rat valproic acid increases methylation ISO CCDC9B (Homo sapiens) 6480464 Valproic Acid results in increased methylation of CCDC9B gene CTD PMID:29154799 10 20 30 40 100 All Rows Gene-Chemical Interaction Annotations Click to see Annotation Detail View 10 20 30 40 100 All Rows 17beta-estradiol (ISO) 2,2',4,4'-Tetrabromodiphenyl ether (ISO) 2,3,7,8-tetrachlorodibenzodioxine (ISO) aconitine (EXP) aflatoxin B1 (EXP) all-trans-retinoic acid (ISO) benzo[a]pyrene (ISO) benzo[a]pyrene diol epoxide I (ISO) bis(2-chloroethyl) sulfide (ISO) bisphenol A (EXP,ISO) C60 fullerene (EXP) cadmium atom (ISO) cadmium dichloride (ISO) calcitriol (ISO) cantharidin (ISO) cisplatin (ISO) copper(II) sulfate (ISO) crotonaldehyde (ISO) cyclosporin A (ISO) Dibutyl phosphate (ISO) dimethylarsinous acid (ISO) ethanol (ISO) folic acid (ISO) FR900359 (ISO) gentamycin (EXP) lipopolysaccharide (ISO) mono(2-ethylhexyl) phthalate (ISO) N-methyl-4-phenylpyridinium (EXP) paracetamol (EXP,ISO) S-(1,2-dichlorovinyl)-L-cysteine (ISO) sunitinib (ISO) temozolomide (ISO) tetrachloromethane (EXP) trichloroethene (EXP) triphenyl phosphate (ISO) urethane (ISO) valproic acid (ISO) 10 20 30 40 100 All Rows References References - curated 10 20 30 40 100 All Rows # Reference Title Reference Citation 1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations 2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions 10 20 30 40 100 All Rows Additional References at PubMed 10 20 30 40 100 All Rows PMID:22658674 10 20 30 40 100 All Rows Genomics Comparative Map Data Ccdc9b(Rattus norvegicus - Norway rat) Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 3 126,190,039 - 126,198,931 (-) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 3 126,192,232 - 126,199,580 (-) Ensembl GRCr8 mRatBN7.2 3 105,736,120 - 105,745,039 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 3 105,739,174 - 105,744,697 (-) Ensembl mRatBN7.2 Rnor_6.0 3 110,548,238 - 110,557,096 (-) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 3 110,551,233 - 110,556,813 (-) Ensembl rn6 Rnor6.0 Rnor_5.0 3 117,088,852 - 117,097,427 (-) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 3 105,260,699 - 105,266,052 (-) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 3 104,650,266 - 104,659,124 (-) NCBI Celera Cytogenetic Map 3 q35 NCBI CCDC9B(Homo sapiens - human) Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 15 40,331,452 - 40,340,939 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 15 40,331,452 - 40,340,939 (-) Ensembl hg38 GRCh38 GRCh37 15 40,623,653 - 40,633,140 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 15 38,410,945 - 38,420,460 (-) NCBI Build 36 Build 36 hg18 NCBI36 Celera 15 17,389,636 - 17,399,151 (-) NCBI Celera Cytogenetic Map 15 q15.1 NCBI HuRef 15 17,467,024 - 17,476,543 (-) NCBI HuRef CHM1_1 15 40,743,516 - 40,753,031 (-) NCBI CHM1_1 T2T-CHM13v2.0 15 38,138,324 - 38,147,811 (-) NCBI T2T-CHM13v2.0 Ccdc9b(Mus musculus - house mouse) Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 2 118,584,626 - 118,593,421 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 2 118,584,639 - 118,593,142 (-) Ensembl GRCm39 Ensembl GRCm39 GRCm38 2 118,754,145 - 118,762,947 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 2 118,754,158 - 118,762,661 (-) Ensembl mm10 GRCm38 MGSCv37 2 118,579,881 - 118,588,397 (-) NCBI MGSCv37 MGSCv37 mm9 NCBIm37 MGSCv36 2 118,445,599 - 118,453,107 (-) NCBI MGSCv36 mm8 Celera 2 119,908,822 - 119,917,331 (-) NCBI Celera Cytogenetic Map 2 E5 NCBI cM Map 2 59.45 NCBI Ccdc9b(Chinchilla lanigera - long-tailed chinchilla) Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955416 7,257,232 - 7,267,171 (-) Ensembl ChiLan1.0 NW_004955416 7,258,446 - 7,268,342 (-) NCBI ChiLan1.0 ChiLan1.0 CCDC9B(Pan paniscus - bonobo/pygmy chimpanzee) Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 16 29,565,417 - 29,574,915 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 15 33,716,865 - 33,726,375 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 15 19,265,502 - 19,275,023 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 15 37,520,475 - 37,529,968 (-) NCBI PanPan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 15 37,520,475 - 37,529,968 (-) Ensembl panPan2 panpan1.1 CCDC9B(Canis lupus familiaris - dog) Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 30 7,514,029 - 7,523,076 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 30 7,516,710 - 7,523,357 (-) Ensembl canFam3 CanFam3.1 Dog10K_Boxer_Tasha 30 7,567,936 - 7,576,983 (-) NCBI Dog10K_Boxer_Tasha Dog10K_Boxer_Tasha ROS_Cfam_1.0 30 7,639,833 - 7,648,881 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 30 7,639,833 - 7,648,874 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 30 7,564,367 - 7,573,415 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 30 7,670,318 - 7,679,353 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 30 7,799,099 - 7,808,147 (-) NCBI UU_Cfam_GSD_1.0 UU_Cfam_GSD_1.0 Ccdc9b(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl mIctTri1.hap1 5 39,649,077 - 39,658,160 (+) NCBI mIctTri1.hap1 HiC_Itri_2 NW_024408640 85,947,901 - 85,956,972 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936471 3,795,343 - 3,805,010 (-) Ensembl SpeTri2.0 Ensembl SpeTri2.0 NW_004936471 3,795,964 - 3,805,023 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0 CCDC9B(Sus scrofa - pig) Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 1 130,974,664 - 130,983,971 (+) Ensembl susScr11 Sscrofa11.1 Sscrofa11.1 1 130,974,635 - 130,983,973 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 1 146,059,846 - 146,069,050 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3 CCDC9B(Chlorocebus sabaeus - green monkey) Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl mChlSab1.0.hap1 26 16,127,854 - 16,138,082 (-) NCBI mChlSab1.0.hap1 Vero_WHO_p1.0 NW_023666048 98,280,644 - 98,290,293 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0 ChlSab1.1 26 42,647,463 - 42,683,869 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 26 42,674,301 - 42,680,175 (+) Ensembl ChlSab1.1 Ensembl chlSab2 Vervet-AGM Ccdc9b(Heterocephalus glaber - naked mole-rat) Naked Mole-Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HetGla_female_1.0 Ensembl NW_004624804 7,636,587 - 7,642,103 (-) Ensembl HetGla_female_1.0 Ensembl hetGla2 HetGla_female_1.0 Ensembl HetGla 1.0 NW_004624804 7,633,390 - 7,642,451 (-) NCBI HetGla 1.0 HetGla 1.0 hetGla2 Ccdc9b(Rattus rattus - black rat) Black Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Rrattus_CSIRO_v1 5 96,908,238 - 96,920,114 (-) NCBI Rrattus_CSIRO_v1 Variants . Variants in Ccdc9b52 total Variants miRNA Target Status (No longer updated) Predicted Target Of Summary Value Count of predictions: 46 Count of miRNA genes: 44 Interacting mature miRNAs: 46 Transcripts: ENSRNOT00000045362 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction The detailed report is available here: Full Report CSV TAB Printer miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. QTLs in Region (GRCr8) 10 20 30 40 100 All Rows The following QTLs overlap with this region. Full Report CSV TAB Printer Gviewer RGD ID Symbol Name LOD P Value Trait Sub Trait Chr Start Stop Species 2301414 Kidm37 Kidney mass QTL 37 0.001 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 3 96509147 141509147 Rat 1582238 Bw68 Body weight QTL 68 3.2 0.0064 body mass (VT:0001259) body weight (CMO:0000012) 3 73592512 136118980 Rat 1582239 Epfw1 Epididymal fat weight QTL 1 4.5 0.0006 epididymal fat pad mass (VT:0010421) epididymal fat pad weight to body weight ratio (CMO:0000658) 3 73592512 136118980 Rat 70216 Cm14 Cardiac mass QTL 14 2.1 heart mass (VT:0007028) heart wet weight (CMO:0000069) 3 51581665 184004958 Rat 2292591 Esta4 Estrogen-induced thymic atrophy QTL 4 thymus mass (VT:0004954) thymus wet weight (CMO:0000855) 3 67641776 167835660 Rat 1358362 Srcrt2 Stress Responsive Cort QTL 2 2.78 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 3 58601291 153936591 Rat 1582216 Bw65 Body weight QTL 65 6.3 body mass (VT:0001259) body weight (CMO:0000012) 3 122654702 136118980 Rat 737818 Hcar12 Hepatocarcinoma resistance QTL 12 2.6 liver integrity trait (VT:0010547) volume of individual liver tumorous lesion (CMO:0001078) 3 49872657 138829559 Rat 1582218 Bw74 Body weight QTL 74 3.9 0.0021 body mass (VT:0001259) body weight (CMO:0000012) 3 73592512 136118980 Rat 1582219 Bw63 Body weight QTL 63 3.8 0.001 body mass (VT:0001259) body weight (CMO:0000012) 3 116582412 136118980 Rat 1582221 Kidm30 Kidney mass QTL 30 3.5 0.0008 kidney mass (VT:0002707) both kidneys wet weight (CMO:0000085) 3 85062224 136118980 Rat 1582210 Bw71 Body weight QTL 71 3.3 0.0012 body mass (VT:0001259) body weight (CMO:0000012) 3 85062224 136118980 Rat 7387306 Bw124 Body weight QTL 124 3.2 0.0003 body mass (VT:0001259) body weight (CMO:0000012) 3 104545086 149545086 Rat 1300111 Rf12 Renal function QTL 12 3.78 renal blood flow trait (VT:2000006) absolute change in renal blood flow rate (CMO:0001168) 3 81425008 141509147 Rat 724523 Tsu1 Thymus enlargement suppressive QTL 1 3.84 thymus mass (VT:0004954) thymus weight to body weight ratio (CMO:0000612) 3 70845569 136091483 Rat 1600376 Arunc5 Aerobic running capacity QTL 5 0.21 exercise endurance trait (VT:0002332) longest distance run on treadmill (CMO:0001406) 3 93829559 138829559 Rat 8694437 Bw167 Body weight QTL 167 22.46 0.001 retroperitoneal fat pad mass (VT:0010430) retroperitoneal fat pad weight to body weight ratio (CMO:0000635) 3 112250810 157250810 Rat 2302273 Gluco35 Glucose level QTL 35 5.3 0.001 blood glucose amount (VT:0000188) blood glucose level (CMO:0000046) 3 101255536 134750886 Rat 8662816 Vetf4 Vascular elastic tissue fragility QTL 4 4 renal artery integrity trait (VT:0010642) number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563) 3 79649560 177741895 Rat 2292613 Ept16 Estrogen-induced pituitary tumorigenesis QTL 16 8.3 pituitary gland mass (VT:0010496) pituitary gland wet weight (CMO:0000853) 3 67641995 130815812 Rat 1581503 Cm58 Cardiac mass QTL 58 2.7 0.05 heart left ventricle mass (VT:0007031) heart left ventricle weight to body weight ratio (CMO:0000530) 3 96509147 141509147 Rat 1354611 Despr2 Despair related QTL 2 3.03 0.0028 locomotor behavior trait (VT:0001392) amount of time spent in voluntary immobility (CMO:0001043) 3 117537367 162537367 Rat 2303620 Vencon4 Ventilatory control QTL 4 3.9 respiration trait (VT:0001943) tidal volume (CMO:0000222) 3 125116475 170116475 Rat 631649 Bp123 Blood pressure QTL 123 3.2 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 3 110225882 155225882 Rat 631200 Cm25 Cardiac mass QTL 25 4.8 0.0001 heart left ventricle mass (VT:0007031) heart left ventricle wet weight (CMO:0000071) 3 81541464 126563126 Rat 12879848 Bw181 Body weght QTL 181 0.015 body mass (VT:0001259) body weight (CMO:0000012) 3 90755164 141509147 Rat 5686842 Rf59 Renal function QTL 59 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 3 122395989 167395989 Rat 1358885 Bp251 Blood pressure QTL 251 3.8 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 3 1 141509147 Rat 1581546 Pur13 Proteinuria QTL 13 2.93 0.0335 urine total protein amount (VT:0000032) urine protein excretion rate (CMO:0000759) 3 98651826 167012663 Rat 631665 Bw8 Body weight QTL 8 5.5 body mass (VT:0001259) body weight (CMO:0000012) 3 125814931 139636791 Rat 1331758 Bp207 Blood pressure QTL 207 2.848 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 3 110634702 155634702 Rat 1358888 Bp264 Blood pressure QTL 264 4.43 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 3 5675975 141509147 Rat 1358186 Ept2 Estrogen-induced pituitary tumorigenesis QTL 2 8.3 pituitary gland mass (VT:0010496) pituitary gland wet weight (CMO:0000853) 3 67641995 130815812 Rat 724532 Cm17 Cardiac mass QTL 17 2 heart mass (VT:0007028) calculated heart weight (CMO:0000073) 3 116188400 161188400 Rat 10 20 30 40 100 All Rows Expression RNA-SEQ Expression Click on a value in the shaded box below the category label to view a detailed expression data table for that system. 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Loading... {{data.value}} Sequence Nucleotide Sequences 3 5 10 20 30 100 All Rows RefSeq Transcripts XM_056985387 (Get FASTA) NCBI Sequence Viewer Search GEO for Microarray Profiles XM_056985388 (Get FASTA) NCBI Sequence Viewer Search GEO for Microarray Profiles XM_056985389 (Get FASTA) NCBI Sequence Viewer Search GEO for Microarray Profiles XM_063285305 (Get FASTA) NCBI Sequence Viewer Search GEO for Microarray Profiles XM_063285306 (Get FASTA) NCBI Sequence Viewer Search GEO for Microarray Profiles XR_001843019 (Get FASTA) NCBI Sequence Viewer Search GEO for Microarray Profiles XR_010065344 (Get FASTA) NCBI Sequence Viewer Search GEO for Microarray Profiles XR_010065345 (Get FASTA) NCBI Sequence Viewer Search GEO for Microarray Profiles XR_085782 (Get FASTA) NCBI Sequence Viewer Search GEO for Microarray Profiles GenBank Nucleotide CH473949 (Get FASTA) NCBI Sequence Viewer Search GEO for Microarray Profiles JAXUCZ010000003 (Get FASTA) NCBI Sequence Viewer Search GEO for Microarray Profiles 3 5 10 20 30 100 All Rows Reference Sequences 3 5 10 20 100 All Rows Ensembl Acc Id: ENSRNOT00000045362 ⟹ ENSRNOP00000046560 Type: CODING Position: Rat Assembly Chr Position (strand) Source GRCr8 Ensembl 3 126,193,233 - 126,198,571 (-) Ensembl mRatBN7.2 Ensembl 3 105,739,316 - 105,744,697 (-) Ensembl Rnor_6.0 Ensembl 3 110,551,432 - 110,556,813 (-) Ensembl Ensembl Acc Id: ENSRNOT00000092158 ⟹ ENSRNOP00000070443 Type: CODING Position: Rat Assembly Chr Position (strand) Source GRCr8 Ensembl 3 126,192,232 - 126,199,580 (-) Ensembl mRatBN7.2 Ensembl 3 105,739,174 - 105,744,697 (-) Ensembl Rnor_6.0 Ensembl 3 110,551,233 - 110,556,808 (-) Ensembl Ensembl Acc Id: ENSRNOT00000094242 ⟹ ENSRNOP00000079722 Type: CODING Position: Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 3 105,739,316 - 105,744,626 (-) Ensembl RefSeq Acc Id: XM_056985387 ⟹ XP_056841367 Type: CODING Position: Rat Assembly Chr Position (strand) Source GRCr8 3 126,190,039 - 126,198,928 (-) NCBI mRatBN7.2 3 105,736,120 - 105,745,039 (-) NCBI RefSeq Acc Id: XM_056985388 ⟹ XP_056841368 Type: CODING Position: Rat Assembly Chr Position (strand) Source GRCr8 3 126,190,039 - 126,197,711 (-) NCBI mRatBN7.2 3 105,736,120 - 105,743,800 (-) NCBI RefSeq Acc Id: XM_056985389 ⟹ XP_056841369 Type: CODING Position: Rat Assembly Chr Position (strand) Source GRCr8 3 126,190,039 - 126,198,931 (-) NCBI mRatBN7.2 3 105,736,120 - 105,745,039 (-) NCBI RefSeq Acc Id: XM_063285305 ⟹ XP_063141375 Type: CODING Position: Rat Assembly Chr Position (strand) Source GRCr8 3 126,190,039 - 126,198,931 (-) NCBI RefSeq Acc Id: XM_063285306 ⟹ XP_063141376 Type: CODING Position: Rat Assembly Chr Position (strand) Source GRCr8 3 126,190,039 - 126,197,334 (-) NCBI RefSeq Acc Id: XR_010065344 Type: NON-CODING Position: Rat Assembly Chr Position (strand) Source GRCr8 3 126,193,679 - 126,198,928 (-) NCBI RefSeq Acc Id: XR_010065345 Type: NON-CODING Position: Rat Assembly Chr Position (strand) Source GRCr8 3 126,194,618 - 126,198,928 (-) NCBI 3 5 10 20 100 All Rows Protein Sequences 10 20 30 40 100 All Rows Protein RefSeqs XP_056841367 (Get FASTA) NCBI Sequence Viewer XP_056841368 (Get FASTA) NCBI Sequence Viewer XP_056841369 (Get FASTA) NCBI Sequence Viewer XP_063141375 (Get FASTA) NCBI Sequence Viewer XP_063141376 (Get FASTA) NCBI Sequence Viewer GenBank Protein EDL79872 (Get FASTA) NCBI Sequence Viewer EDL79873 (Get FASTA) NCBI Sequence Viewer Ensembl Protein ENSRNOP00000046560.6 ENSRNOP00000070443 ENSRNOP00000070443.3 10 20 30 40 100 All Rows Reference Protein Sequences 3 5 10 20 100 All Rows Ensembl Acc Id: ENSRNOP00000070443 ⟸ ENSRNOT00000092158 Ensembl Acc Id: ENSRNOP00000046560 ⟸ ENSRNOT00000045362 Ensembl Acc Id: ENSRNOP00000079722 ⟸ ENSRNOT00000094242 RefSeq Acc Id: XP_056841369 ⟸ XM_056985389 - Peptide Label: isoform X5 RefSeq Acc Id: XP_056841367 ⟸ XM_056985387 - Peptide Label: isoform X1 - UniProtKB: A0A8I5ZNP2 (UniProtKB/TrEMBL) RefSeq Acc Id: XP_056841368 ⟸ XM_056985388 - Peptide Label: isoform X2 - UniProtKB: A0A8I5ZNP2 (UniProtKB/TrEMBL) RefSeq Acc Id: XP_063141375 ⟸ XM_063285305 - Peptide Label: isoform X3 - UniProtKB: A0A8I5ZNP2 (UniProtKB/TrEMBL) RefSeq Acc Id: XP_063141376 ⟸ XM_063285306 - Peptide Label: isoform X4 3 5 10 20 100 All Rows Protein Structures Name Modeler Protein Id AA Range Protein Structure AF-D3ZKN0-F1-model_v2 AlphaFold D3ZKN0 1-538 view protein structure Transcriptome eQTL View at Phenogen WGCNA View at Phenogen Tissue/Strain Expression View at Phenogen Promoters RGD ID: 13692318 Promoter ID: EPDNEW_R2836 Type: initiation region Name: Ccdc9b_1 Description: coiled-coil domain containing 9B SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) Experiment Methods: Single-end sequencing. Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 3 110,556,794 - 110,556,854 EPDNEW Additional Information External Database Links 3 5 10 20 40 100 All Rows Database Acc Id Source(s) AGR Gene RGD:1565536 AgrOrtholog BioCyc Gene G2FUF-48231 BioCyc Ensembl Genes ENSRNOG00000028910 Ensembl, ENTREZGENE, UniProtKB/TrEMBL Ensembl Transcript ENSRNOT00000045362.6 UniProtKB/TrEMBL ENSRNOT00000092158 ENTREZGENE ENSRNOT00000092158.3 UniProtKB/TrEMBL InterPro DUF4594 UniProtKB/TrEMBL NCBI Gene 311323 ENTREZGENE PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 9B UniProtKB/TrEMBL PTHR15635 UniProtKB/TrEMBL Pfam DUF4594 UniProtKB/TrEMBL PhenoGen Ccdc9b PhenoGen RatGTEx ENSRNOG00000028910 RatGTEx UniProt A0A0G2JXY0_RAT UniProtKB/TrEMBL A0A8I5ZNP2 ENTREZGENE D3ZKN0_RAT UniProtKB/TrEMBL 3 5 10 20 40 100 All Rows Nomenclature History Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status 2017-10-23 Ccdc9b coiled-coil domain containing 9B RGD1565536 similar to hypothetical protein Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED 2008-04-30 RGD1565536 similar to hypothetical protein RGD1565536_predicted similar to hypothetical protein (predicted) 'predicted' is removed 2292626 APPROVED 2006-03-07 RGD1565536_predicted similar to hypothetical protein (predicted) LOC311323 similar to hypothetical protein Symbol and Name status set to approved 1299863 APPROVED 2006-02-09 LOC311323 similar to hypothetical protein Symbol and Name status set to provisional 70820 PROVISIONAL